Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K23
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   111   5e-25
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   3.5  
AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical ...    29   6.0  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  111 bits (268), Expect = 5e-25
 Identities = 54/76 (71%), Positives = 62/76 (81%)
 Frame = +2

Query: 191 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 370
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV H
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99

Query: 371 HGQVIYTRATKGDDPV 418
           HGQV+YTRATK  D +
Sbjct: 100 HGQVVYTRATKEADVI 115


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 72  PRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 179
           PRR RR    S  +  RRR+ P AA PRRR  P+ +
Sbjct: 464 PRR-RRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 76  EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 177
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.4 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 27  REFLKTFAFQFKDACPRRTRRLRPN 101
           R+F K FA +F +A P  +R  RPN
Sbjct: 361 RQFFKVFADRFTNAIPHTSRPQRPN 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,763
Number of Sequences: 27780
Number of extensions: 310673
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)