Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K22
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.94 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +3

Query: 714 PPXLRG----GXPPXXXKKXPGFPPXXTPPGXPPXXPP 815
           PP + G      PP         PP  TPP  PP  PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 684  PPXXKXKKKTPPXLRGGXPPXXXKKXPGFPPXXTPPGXPPXXPP 815
            PP  K     PP       P   K     PP   P G PP   P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 684  PPXXKXKKKTPPXLRGGXPPXXXKKXPGFPPXXTPPGXPPXXPP 815
            PP  K     PP       P   K     PP   P G PP   P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +3

Query: 684  PPXXKXKKKTPPXLRGGXPPXXXKKXPGFPPXXTPPGXPPXXPP 815
            PP  K     PP       P   K   G PP   P   PP   P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +3

Query: 687  PXXKXKKKTPPXLRGGXPPXXXKKXPGFPPXXTPPGXPPXXPP 815
            P  + +   PP +    PP      P  P     P  PP  PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -3

Query: 553 GGXNXXPXPKXXGXGXFGGGKGXGAXKXXPXXXGGG 446
           GG +  P P   G G FGG  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +3

Query: 717  PXLRGGXPPXXXKKXPGFP-PXXTPPGXPPXXPPR 818
            P ++   PP       G P P  TP   PP  PPR
Sbjct: 1015 PRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPPR 1049


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 739 PPXXXKXXPGSPPXKPPXGXPLXXPPGXKKK 831
           PP      P  P  +PP   P   PPG  KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,200
Number of Sequences: 5004
Number of extensions: 16919
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)