Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_K18
(945 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 208 7e-55
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 0.72
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 5.1
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 5.1
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 5.1
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 27 5.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 6.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 8.9
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 26 8.9
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 26 8.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 8.9
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 208 bits (509), Expect = 7e-55
Identities = 106/180 (58%), Positives = 132/180 (73%), Gaps = 1/180 (0%)
Frame = +1
Query: 331 DELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFI 510
DELK++++ RLN++++LSTIALALG ERT+ ELIPFL E+I DEDEVL ALA+QLGNF+
Sbjct: 18 DELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSALADQLGNFV 77
Query: 511 NLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAG 690
+ VGG E+AH LL PLE LAA EETVVRDKAV SL V S + LE++FVPLVQRL+
Sbjct: 78 DYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFVPLVQRLST 137
Query: 691 GDWFTSRTSACGLFSVCYPR-VSAVVKAELRQHFCSLCQDDTPMVRRAAAYKLGEFAKVV 867
+WFTSR S+ GL+ Y + + VK LRQ F LC D+ PMVRR AA +F +V
Sbjct: 138 AEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAPMVRRPAATNCAKFVFLV 197
Score = 42.3 bits (95), Expect = 1e-04
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 4/171 (2%)
Frame = +1
Query: 325 FYDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLALAEQLG 501
F + LK+E+ ++RLN I KL + +G+E L+P + D+ V LA+ + +
Sbjct: 367 FLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIP 426
Query: 502 NFINLVGGGEFAHCLLPPLETLAAVEETV--VRDKAVASLRAVAEHHSPQALEEHFVPLV 675
+ G EF + + L ++ +E+ V +R+ A+ +LR + E + E +P
Sbjct: 427 LLAQQL-GVEFFNEKMGNL-CMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATETIIPKF 484
Query: 676 QRLAGGDWFTSRTSACGLFSVCYPRVSA-VVKAELRQHFCSLCQDDTPMVR 825
+ + R + S P ++A V++ ++ L D P +R
Sbjct: 485 LAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQLVNDPIPNIR 535
Score = 35.9 bits (79), Expect = 0.008
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 334 ELKNEDVQ-LRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLALAEQLGNF 507
EL N+ Q +R + +A LG E+T L+P E + DE+ EV L + +L
Sbjct: 330 ELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVV 389
Query: 508 INLVGGGEFAHCLLPPLETLAAVEETVVR 594
+VG + LLP + TLA ++ VR
Sbjct: 390 NKVVGIELLSQSLLPAIVTLAEDKQWRVR 418
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.5 bits (63), Expect = 0.72
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 334 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGN 504
EL+NE +Q LNS K L T L E ++L+ FL T + E + +L QL N
Sbjct: 295 ELENEKIQTELNSWKSLITNELPT-PEAVSNKLV-FLQNTNANLGERVSSLESQLSN 349
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 5.1
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 364 LNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGN-FINLVGGGEFAH 540
+NS KK + + V T E IPF + D+ A+ L + F NLV GE A+
Sbjct: 595 VNSQKKTAPEVSPISV--TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDAN 652
Query: 541 CLLPPLETL 567
CL LE +
Sbjct: 653 CLFHLLENV 661
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 370 SIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLV 519
SIKK T + G+E +S ++ F + DE L+ Q+ + +NL+
Sbjct: 138 SIKKEGTQVIVFGIETVRSMVLSFPLIILSTLDENFLSEVAQVFSSLNLL 187
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 544 LLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLV 675
LLP + A ++ VRD A+A+ +A+ +P A++ VP V
Sbjct: 96 LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVKA-IVPSV 138
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 593 ETRQWLRSVLLPSTTAL 643
E+RQW+R +LLPS L
Sbjct: 218 ESRQWIRDLLLPSRLGL 234
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 537 TLSPSSTGDISGSGRNSSPRQGSGFAPCCCRAPQPSGT 650
T +P+S G G N++P+ F AP+P+GT
Sbjct: 456 TTTPASGGFSFGQNANNAPKPA--FGSTATTAPKPAGT 491
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 391 IALALGVERTKSELIPFLTETIYDEDEVL 477
+ L +E+ K E++PFL Y +EVL
Sbjct: 473 LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 222 SSQLPLVADISN*DGLDWTLSTDSLKT 302
+S+ PL+ + D ++WTL TDS T
Sbjct: 325 ASEYPLILYDCDFDNIEWTLPTDSPTT 351
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 613 LRAVAEHHSPQALEEHFVPLVQRLAGGDWF 702
L AV HH A H+ VQ+L WF
Sbjct: 438 LNAVVYHHGTSASGGHYTVDVQQLDKSGWF 467
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 331 RKNKSSFSSHVFNESVLSVQSSPSQFEISATS 236
RKN S SS +FN+S + + P + S +S
Sbjct: 634 RKNPQSSSSLMFNQSSVKEEEEPEETSFSDSS 665
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,656,796
Number of Sequences: 5004
Number of extensions: 71462
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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