Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K18
         (945 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   281   4e-76
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set (trithorax/...    31   1.2  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    31   1.2  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    31   1.2  
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    30   2.8  
AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal acet...    29   4.8  
AF025378-1|AAC14016.2|  629|Caenorhabditis elegans acetylcholine...    29   4.8  
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z47356-4|CAA87417.1|  431|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  281 bits (690), Expect = 4e-76
 Identities = 137/178 (76%), Positives = 154/178 (86%)
 Frame = +1

Query: 331 DELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFI 510
           DEL+NEDV LRLNSI+KLSTIALALGVERT++ELI FLT+TIYDEDEVLL LAEQLGNF 
Sbjct: 20  DELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDTIYDEDEVLLVLAEQLGNFT 79

Query: 511 NLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAG 690
            LVGG +  HCLL PLE LA VEETVVRDKAV SLR +A+ HS  +LEEHFVP+++RLA 
Sbjct: 80  PLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADKHSSASLEEHFVPMLRRLAT 139

Query: 691 GDWFTSRTSACGLFSVCYPRVSAVVKAELRQHFCSLCQDDTPMVRRAAAYKLGEFAKV 864
           GDWFTSRTSACGLFSV YPRVS  +K+EL+  F +LC+DDTPMVRRAAA KLGEFAKV
Sbjct: 140 GDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDDTPMVRRAAAAKLGEFAKV 197



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 3/181 (1%)
 Frame = +1

Query: 328 YDELKNEDV-QLRLNSIKKLSTIALALGVERTKSELIPFLTETIYD-EDEVLLALAEQLG 501
           Y +L N+   ++RLN I  L  +   +G  +  + L+P +     D +  V LA+ + + 
Sbjct: 371 YMQLLNDQTPEVRLNIISSLDKVNEVIGAAQLSTSLLPAIVGLAEDGKWRVRLAIVQFMP 430

Query: 502 NFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQR 681
              + +G   F   LLP            +R+ +   ++ + +    Q    + VP +Q+
Sbjct: 431 LLASQLGQEFFDEKLLPLCLNWLTDHVFSIREASTLIMKELTQKFGGQWASTNIVPKMQK 490

Query: 682 LAGGDWFTSR-TSACGLFSVCYPRVSAVVKAELRQHFCSLCQDDTPMVRRAAAYKLGEFA 858
           L     +  R T    L ++        +  E+      L +DD P VR  AA  L    
Sbjct: 491 LQKDTNYLQRMTCLFCLNTLSEAMTQEQILKEIMPIVKDLVEDDVPNVRFNAAKSLKRIG 550

Query: 859 K 861
           K
Sbjct: 551 K 551


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 244 PIFQIETDWTGHLALIH*KRDWKKMTCFYDELKNEDVQLRLNSIKKL 384
           P F+I   WT    +   +  WK   C  D +++  ++LR+NS+ K+
Sbjct: 187 PFFEILVIWTESCGIFASENHWKLRVCGSDTIRH--IKLRINSLAKV 231


>U13875-5|AAA21163.1|  739|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           b protein.
          Length = 739

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 307 WKKMTCFYDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIP 438
           WKKM  F + L++ED  LRLN I+    +  A   +     +IP
Sbjct: 474 WKKMLTFKEMLRSEDPLLRLNPIRSKKGLPDAFYEDEELDGVIP 517


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 2, isoform
            c protein.
          Length = 1510

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 307  WKKMTCFYDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIP 438
            WKKM  F + L++ED  LRLN I+    +  A   +     +IP
Sbjct: 1245 WKKMLTFKEMLRSEDPLLRLNPIRSKKGLPDAFYEDEELDGVIP 1288


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 2, isoform
            a protein.
          Length = 1507

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 307  WKKMTCFYDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIP 438
            WKKM  F + L++ED  LRLN I+    +  A   +     +IP
Sbjct: 1242 WKKMLTFKEMLRSEDPLLRLNPIRSKKGLPDAFYEDEELDGVIP 1285


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 217 KTAVDAARRDEAHPNHVNFTNSLFSVFATHTFI 119
           K  + A   + A+P H N T+ LF +   H FI
Sbjct: 319 KKNIPAYHYEYAYPKHANHTDDLFFIMGVHPFI 351


>AF106589-1|AAC78228.2|  629|Caenorhabditis elegans Abnormal
           acetylcholinesterase protein2 protein.
          Length = 629

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 728 SLVSATHAFRP**RRNFVSIFARSAKMTLRWCDALPPTNL 847
           S  +  H F P   + F +I A+S  +   W  A PPT L
Sbjct: 234 SASTTAHLFAPNSHKYFRNIIAKSGSIINSWASATPPTML 273


>AF025378-1|AAC14016.2|  629|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 629

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 728 SLVSATHAFRP**RRNFVSIFARSAKMTLRWCDALPPTNL 847
           S  +  H F P   + F +I A+S  +   W  A PPT L
Sbjct: 234 SASTTAHLFAPNSHKYFRNIIAKSGSIINSWASATPPTML 273


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 313 KMTCFYDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDE 465
           ++T FY +L+ +  +    ++ +L  +A    V  TKS L      +IYDE
Sbjct: 214 QITNFYSKLREKVNEREKEALSELKDVARTARVNNTKSLLTLMQVRSIYDE 264


>Z47356-4|CAA87417.1|  431|Caenorhabditis elegans Hypothetical
           protein T15H9.4 protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 577 EETVVRDKAVASLRAVAEHHSPQALEEHFVPLVQRLAGGDW 699
           E+ ++  +A AS  ++ +   P+A   HF+P+V  +    W
Sbjct: 33  EDKIISIRATASSASITKESVPEAPPTHFIPVVVTVEPDAW 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,599,778
Number of Sequences: 27780
Number of extensions: 419144
Number of successful extensions: 1219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)