Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_K15
(920 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 257 1e-69
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 32 0.13
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.5
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 26 6.5
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 6.5
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 6.5
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 8.6
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 8.6
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 257 bits (630), Expect = 1e-69
Identities = 132/215 (61%), Positives = 160/215 (74%), Gaps = 2/215 (0%)
Frame = +3
Query: 252 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 431
+ ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP LD+ K
Sbjct: 2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEK 61
Query: 432 ELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQF 611
+L+I+I P+K L+I DTGIGMTK DL+NNLG IAKSGTK FMEA +GADISMIGQF
Sbjct: 62 DLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQF 121
Query: 612 GVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGXSFTVRQTAVSP-LVEVQRSSFTSKRT 788
GVGFYS+YLVAD+V V SKHNDDEQY+WESSAG SFTV P L+ K
Sbjct: 122 GVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKED 181
Query: 789 WAEFMEEXKSKRS*RNIPSH-GYPIKLMVEKKXKK 890
+++EE K + + YPI+L+V ++ +K
Sbjct: 182 QLQYLEEKTIKDTVKKHSEFISYPIQLVVTREVEK 216
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 31.9 bits (69), Expect = 0.13
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +3
Query: 279 AEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIKIIPN 458
AEI L +N + R++++N L KI DPSK ++Y K+
Sbjct: 2433 AEIGPLSPFKFTDASNNTKFISRDIVANG---LSKILILKDYDPSKAVRKPKIYSKVSTE 2489
Query: 459 KNEGTLTIIDTGIGMTKADLVNNLG 533
+ + L D+GI ++ L+ +G
Sbjct: 2490 ERDFNLEQFDSGIDLSVKFLLEGIG 2514
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 309 INTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 446
+N S +EI L++ I + D I+Y S S ++ +Y+K
Sbjct: 377 LNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -2
Query: 562 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 404
KA++P F + +AL+ PI ++ I +F+ IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 461 LVGNDLDVQLFATIEF*RIRERFIPDFV*SVR*IGNQLTKENFFV 327
LV + LDV F + ++ F+ D+ SVR N+ K NFF+
Sbjct: 295 LVISMLDVDGFRIDKATQMTVDFLVDWAKSVRLCANRFNKSNFFI 339
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 666 KHNDDEQYVWESSAGXSFTVRQTAVSPLVEVQRSSFTSKRTW 791
K++D +YV++SSAG + T V V + F + +W
Sbjct: 198 KYDDIGKYVYDSSAGDNITA--YVVDTGVSIHHVEFEGRASW 237
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 539 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 432
DG V I G +DDR+ L+ + NDL+V L
Sbjct: 2 DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 642 ADRVTVHSKHNDDEQYVWESSAGXSFTVRQTAV 740
+D+V + HN YVW+S+ SF QTA+
Sbjct: 320 SDKVPIECTHNFSVDYVWKST---SFDRMQTAL 349
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 401 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 529
H S K +R+ D + +ER H+ +R+R YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 339 FLRELISNSSDALDKIRYESL 401
F+R+++ +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,530
Number of Sequences: 5004
Number of extensions: 70877
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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