Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K12
         (1121 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    24   8.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    24   8.8  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    24   8.8  

>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 23.8 bits (49), Expect(2) = 8.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 1101 GAPPPPPP 1078
            G+PPPPPP
Sbjct: 316  GSPPPPPP 323



 Score = 23.0 bits (47), Expect(2) = 8.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 1107 GXGAPPPPP 1081
            G G+PPPPP
Sbjct: 272  GSGSPPPPP 280


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 23.8 bits (49), Expect(2) = 8.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 1101 GAPPPPPP 1078
            G+PPPPPP
Sbjct: 301  GSPPPPPP 308



 Score = 23.0 bits (47), Expect(2) = 8.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 1107 GXGAPPPPP 1081
            G G+PPPPP
Sbjct: 257  GSGSPPPPP 265


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 23.8 bits (49), Expect(2) = 8.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 1101 GAPPPPPP 1078
            G+PPPPPP
Sbjct: 295  GSPPPPPP 302



 Score = 23.0 bits (47), Expect(2) = 8.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 1107 GXGAPPPPP 1081
            G G+PPPPP
Sbjct: 251  GSGSPPPPP 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,824,873
Number of Sequences: 27780
Number of extensions: 61254
Number of successful extensions: 975
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3025992820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)