Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K10
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    56   9e-09
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    32   0.099
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    30   0.40 
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    29   1.2  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    27   4.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   6.5  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   8.6  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +1

Query: 427 SSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLE-KVKLLKCSGCQFVYYCGRSCQKDAW 603
           +  I  G +++ ++     L S      C  C E KVK  +C+ C+ ++YC + CQK  W
Sbjct: 21  TDNIPIGKIIIRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW 80

Query: 604 GDHKWECPNLKRVAPK-VIPDGARMLAKI 687
             HK EC  L+      ++P   R+L ++
Sbjct: 81  PFHKLECKALQASKQNGILPSVCRLLIRL 109


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 544 KCSGCQFVYYCGRSCQKDAWGDHKWEC 624
           KC  C+   YC + CQ  AW  H   C
Sbjct: 497 KCRRCRRTKYCSKECQHQAWPGHSRWC 523


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 502 GNRCDNCLEKVKLLKC--SGCQFVYYCGRSCQKDAWGDHK 615
           G  C+N  ++++  KC   G +  Y+CG+ C +++W  HK
Sbjct: 12  GIDCNNEADRLQCPKCLNDGVKS-YFCGQECFRNSWNIHK 50


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 517 YHIGFLVLWTIIHKRTVALTTKDLQVLFRNLYF 419
           Y IGFL+L+TI     V L+   L + F + YF
Sbjct: 347 YAIGFLILFTIGGLTGVILSNSVLDIAFHDTYF 379


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 20  HYRESLRFEYVVSYQNATDVQNHKMSKC 103
           HY E   + ++  Y   TDVQ+H  ++C
Sbjct: 326 HYFEDFGYYHLPWYHCPTDVQSHATARC 353


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 191 HHLVHQK*KQTKTEFLFLETNIFYKYISFDIWTFY 87
           HHL+    K+++   L   + ++YKY  F +   Y
Sbjct: 348 HHLLENLSKESRLHILLQLSQLYYKYNDFQLSAAY 382


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 26  RESLRFEYVVSYQNATDVQNH--KMSKCQRRYIYKKCLSLKIG 148
           R  LR  Y+  YQN     NH  + SK +R Y        KIG
Sbjct: 3   RNGLRKVYIAIYQNLCSCPNHYAQHSKNKRNYHQLTIFRSKIG 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,757,358
Number of Sequences: 5004
Number of extensions: 79862
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)