Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_K10
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 69 7e-12
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 44 1e-04
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 40 0.003
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559... 38 0.008
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959 33 0.24
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 33 0.32
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 31 1.3
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 31 1.7
05_03_0057 - 7872771-7873326,7873432-7873786,7873892-7874103,787... 30 2.2
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 30 2.9
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731 29 3.9
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438... 29 6.8
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 28 9.0
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 68.5 bits (160), Expect = 7e-12
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +1
Query: 442 PGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKWE 621
PG++++S++P+A + G+ CDNC L KCS C+ +YCG +CQ++ W H+ E
Sbjct: 37 PGEVVISQEPYASTPNKISVGSNCDNCFASRNLRKCSVCRVAWYCGSACQREEWKLHQLE 96
Query: 622 CPNLKRVA---PKVIPDGARMLAKIINR 696
C + + K++ R++ +++ R
Sbjct: 97 CRAIAALTEDRKKMLTPTIRLMVRLVLR 124
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 502 GNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW-GDHKWECPNLKRVAP 648
G C C + KCSGC+ V YC + CQ W HK++C +K+ +P
Sbjct: 102 GEPCAAC-GYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFKCKQMKKSSP 150
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 39.9 bits (89), Expect = 0.003
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Frame = +1
Query: 544 KCSGCQFVYYCGRSCQKDAWGDHKWECPNLKRVAPKVIPDGARMLAKIINRLNRGDGHSF 723
+C GC V YC R+ Q WG HK EC L ++ D + + + H+F
Sbjct: 53 RCGGCGAVAYCSRAHQTVHWGFHKEECARLAEQMSRI--DMLKQFPFTFSVESPAPNHTF 110
Query: 724 RSF--YSATSFR-----MWKDLMSHYPNLKADK---KRMDHSLRCALC-CMNFKRHFST 867
S + SF+ +WK P + + K K D S+ ALC C + + ST
Sbjct: 111 PSLRCFLLESFKLHQKGLWKSECICDPEVTSVKDLSKTTDWSMGSALCPCTEPEHNVST 169
>10_08_0571 -
18855317-18855541,18855667-18855747,18855849-18855963,
18856061-18856224,18856307-18856540,18856626-18856781,
18857113-18857244,18857850-18857984,18858071-18858457,
18858708-18858826,18858914-18859124,18859268-18859339,
18859542-18859628,18859993-18860127,18860240-18860368
Length = 793
Score = 38.3 bits (85), Expect = 0.008
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 421 NTSSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVK--LLKCSGCQFVYYCGRSCQK 594
++ ++I P L+ +E P A ++ + C C + ++ C C YC CQ+
Sbjct: 232 SSPNDISPASLIHAEDPLAVIIMKSCRDTHCHYCFSEAPADVVVCPSCTIPIYCSNRCQE 291
Query: 595 DAWG 606
A G
Sbjct: 292 KAIG 295
>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
Length = 395
Score = 33.5 bits (73), Expect = 0.24
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 544 KCSGCQFVYYCGRSCQKDAWGD-HKWECPNLKR 639
+CS C V YC R+CQ W HK EC + R
Sbjct: 341 RCSVCGVVNYCSRACQALHWKTAHKAECTPMDR 373
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 33.1 bits (72), Expect = 0.32
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +1
Query: 424 TSSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW 603
T I PG L S++ + + C C K +CS C+ V YC CQ W
Sbjct: 3 TPDVILPGPSLRPMPYMRSAPSARPEYHECATCHGPAKT-RCSRCKSVRYCSGKCQIIHW 61
Query: 604 GD-HKWEC 624
HK C
Sbjct: 62 RQGHKQTC 69
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/75 (25%), Positives = 40/75 (53%)
Frame = +2
Query: 77 VQNHKMSKCQRRYIYKKCLSLKIGTQFLFVSTSDVPSDDCGRVFSKYNVTDIENCIFRTP 256
VQ+ + + +R++ K+ + K+G + + V + DC + S+ + ++ C TP
Sbjct: 274 VQDQQSRELSQRHVSKR--AKKLGLKEEEIKLKPVIAFDCAEIRSR-DWCNVVTCHTDTP 330
Query: 257 GSERGRLQNFLLQQH 301
+ RLQNF++ +H
Sbjct: 331 QAYVWRLQNFVIGEH 345
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 529 KVKLLKCSGCQFVYYCGRSCQKDAWG-DHKWEC 624
K + +CS C V YC R+CQ W HK C
Sbjct: 316 KHEFRRCSVCSGVIYCSRACQAMHWKVAHKSAC 348
>05_03_0057 -
7872771-7873326,7873432-7873786,7873892-7874103,
7875248-7875453
Length = 442
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 703 RGDG--HSFRSFYSATSFRMWKDLMSHYPNLKADKKRMDHSLRCALCCMNFKRHFSTEHX 876
+G+G FR Y + S D + N D+++M + L C+ F RH
Sbjct: 362 KGNGLVEKFRRLYYSNSLL---DAVDRRLNGDFDEEQMKRVILIGLLCVQFDRHMRPSSK 418
Query: 877 ELMGLMDG 900
E++G ++G
Sbjct: 419 EVLGYLEG 426
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 225 PILRIVFLERQVASEAAYKISYFNSTLSRLFKNWKLI 335
P+L + +VAS+ +Y + YF T NW+++
Sbjct: 191 PVLPVSITPCKVASDGSYAVQYFEKTFPLSRANWEML 227
>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
Length = 369
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 544 KCSGCQFVYYCGRSCQKDAW-GDHKWECPNLKR 639
+CS C YC R+CQ W HK +C + R
Sbjct: 328 RCSVCGAANYCSRACQALDWKRAHKAQCVPMDR 360
>03_01_0004 +
41829-42203,42376-42474,42699-42743,43604-43741,
43852-44157,44779-45689,45826-46093
Length = 713
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 514 DNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDH 612
D +E + L C+GC+F GR DA GDH
Sbjct: 184 DYFIEVLGLRNCAGCRFYRAEGRGNLWDAKGDH 216
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +1
Query: 544 KCSGCQFVYYCGRSCQKDAWGD-HKWEC 624
+C C+ V YC CQ W HK EC
Sbjct: 133 RCKQCKAVKYCSFKCQIAHWRQGHKNEC 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,795,749
Number of Sequences: 37544
Number of extensions: 461700
Number of successful extensions: 907
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -