Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K09
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   3.7  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.7  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    26   8.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   8.5  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 EMLPQNLLYSVSRFSHTFGWTNFMLCSLPI 285
           E+LP N+ Y++   +H   W++F   SL +
Sbjct: 694 ELLPNNVPYNLGDLNHPVYWSSFPTISLNV 723


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 480 SSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYASDQENHSTPRRRSEYRRVH 641
           +S  P  V   P SA   D  LY  ++ S  SL+ ++Q   S+P   S   R H
Sbjct: 128 ASQPPPQVQRLPASAPKHD--LYSSANASSASLHPTEQRTTSSPTIPSYANRTH 179


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 590 SGKSFYAKKKIRIPARSQATLALSAATNPTEASRE 694
           SGK   A KK R  A  +A    +AA NP   S E
Sbjct: 44  SGKEAKALKKARKQASRRAKAEAAAANNPPGVSEE 78


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 562  IEESSYKNTSDPFADVGDPPTATGTALLLSITWHLMPLTPSISNILSVL 416
            + E  YK   DP  D  +    T  A LL I +  +P+   I + L  L
Sbjct: 1035 LSELLYKGKIDPMNDSNNKTPNTSPAELLGIKFTTLPMAQYIHSELEAL 1083


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,593
Number of Sequences: 5004
Number of extensions: 63220
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)