Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_K06
(1245 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.012
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.77
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 4.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 5.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 7.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 7.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 7.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 9.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPPP 1094
PPPPPPPP PPPP PPP
Sbjct: 761 PPPPPPPPGV----AGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.77
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPP 1097
PPPPPPPP P P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPPP 1094
PPPPPPP + P P P P
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXP 1100
PPPPPP T P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 1171 PPPPPPPXXXTXPQNXXPPPPXXPP 1097
P P P P P PPPP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 63 GXXXPPPPPPFXXXNXXXPPP 1
G PPPPPP PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.9 bits (79), Expect = 0.012
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPP 1109
PPPPPPPP Q PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPP 1097
PP PPPP + PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -1
Query: 63 GXXXPPPPPP-FXXXNXXXPPP 1
G PPPPPP F + PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPP 28
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.77
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = -3
Query: 1174 PP--PPPPPPXXXTXPQNXXPPPPXXPPP 1094
PP P PP P P PP P PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPP 152
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Frame = -3
Query: 1174 PPPPPP------PPXXXTXPQNXXPPPPXXPPP 1094
PPP P PP + P P PP PPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPPPXRXXXXXXXEXXXXPNK 1043
PP PPPP N P PP E PN+
Sbjct: 198 PPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNR 241
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -3
Query: 1168 PPPPPPXXXTXPQNXXPPPPXXPPP 1094
PPP P P P P PPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Frame = -3
Query: 1171 PPPPPPPXXXTXPQNXXP----PPPXXPPP 1094
P PPPPP P + P PP PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPP--PPXXPPP 1094
P PPPPP P P PP PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPPP 1094
PPPP PP P PP P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -3
Query: 1174 PPPPPPPPXXX----TXPQNXXPPPPXXPPP 1094
PPP PP + P + PPPP PPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Frame = -3
Query: 1174 PPPPPPPPXXXT-----XPQNXXPPPPXXPPP 1094
PPPPPPP PQ PPP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP--PPP 366
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Frame = -3
Query: 1174 PPPPPP------PPXXXTXPQNXXPPPPXXPPP 1094
PPPPP PP + PPPP PPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPP--PPP 343
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPP 1112
PPPPPPPP + P P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPP 1109
PPPPPPPP ++ P P
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPAP 327
Score = 25.0 bits (52), Expect(2) = 4.2
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = -3
Query: 1120 PPPPXXPPPXRXXXXXXXEXXXXPNKKXLSXV 1025
PPPP PPP E NK + V
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPAPADNKGDMGAV 337
Score = 20.6 bits (41), Expect(2) = 4.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 1129 NXXPPPPXXPPP 1094
N PPP PPP
Sbjct: 302 NGGLPPPPPPPP 313
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPP 1109
PPPPP + P PPPP
Sbjct: 908 PPPPPTASMTASAPAIASPPPP 929
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPP---PPXXPP 1097
PPPPPP P + P PP PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1174 PPPPPPPP 1151
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1174 PPPPPPPP 1151
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1174 PPPPPPPP 1151
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1174 PPPPPPPP 1151
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPPP 1094
PPPPPP P N P P P
Sbjct: 356 PPPPPPMPAPIYNVPNVPTVPTVSPNP 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,327
Number of Sequences: 5004
Number of extensions: 20710
Number of successful extensions: 472
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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