Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K06
         (1245 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.45 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 1174 PPPPPPPP 1151
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 1175 PPPPPPPT 1152
            PPPPPPP+
Sbjct: 1356 PPPPPPPS 1363



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 1119 PPPPPXPP 1096
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPPP 1094
            P P P P      PQ   PP P   PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPP 47



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -3

Query: 1174 PPPPPPPPXXXTXPQNXXPPPPXXPP 1097
            P   P  P   + P     PPP  PP
Sbjct: 27   PHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 1174 PPPPPPPP 1151
            P PPPPPP
Sbjct: 341  PAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 1171 PPPPPPPXXXTXPQN 1127
            P PPPPP   + P +
Sbjct: 341  PAPPPPPPSSSGPDS 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 1174 PPPPPPPP 1151
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 87   STQYIXHRGXXXPPPPPP 34
            S + I   G   PPPPPP
Sbjct: 1847 SARNIPVSGSPEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 5  GGXXXXXXXNGGGGGG 52
          GG       NGGGGGG
Sbjct: 36 GGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,494
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)