Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_K04
(980 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.046
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 9.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.046
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 568 PPPPXRGRXXPPPXXRGGXPXTXPPXPPXXRXPXXGPEXXP 446
PPPP R PP G + PP PP R G P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +3
Query: 840 PRXXPPGRXGGGXXPPXXPXGPXXXXGXPPXXXXXAXPPXPP 965
P PP G PP P P P + PP PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
Score = 26.6 bits (56), Expect = 5.3
Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Frame = -3
Query: 510 PXPNHPXPXPXGRPXX----AXXNXPNXPPXPXGEKKXTHPLPQNX--XXPPPRGXXXNE 349
P P P G+P + + P PP P + PLP PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 348 RGRXXXPRAAXRGRXXXPPWHGPERP 271
GR P ++ R PP P P
Sbjct: 372 TGRQPPPLSSSRA-VSNPPAPPPAIP 396
Score = 25.8 bits (54), Expect = 9.3
Identities = 24/107 (22%), Positives = 24/107 (22%), Gaps = 4/107 (3%)
Frame = +1
Query: 661 PXXPXPPPPGXXXXXXXXXXXXXXXXXXXXRGXPGGGPXXXPXXGXXRGXXPGXPP---- 828
P P PP R P G P P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 829 GXXXPXXXPXGGGGGGXXPPXPRXXPXXXXVGPPXXXXXXXPPXPPG 969
G P P G PP P P PP P P G
Sbjct: 397 GRSAPALPPLGNASRTSTPPVP-TPPSLPPSAPPSLPPSAPPSLPMG 442
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 565 PPPXRGRXXPPPXXRGGXPXTXPPXPP 485
P P +GR PPP P T PP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 568 PPPPXRGRXXPPPXXRGGXPXTXPPXPP 485
PPPP PPP G P PP PP
Sbjct: 761 PPPPP-----PPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 568 PPPPXRGRXXPPPXXRGGXPXTXPPXPP 485
PP P G PPP G PP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 887 GGXXPPPPPPXGXXXGXXXPGGXP 816
GG PPPPPP G P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 875 PPPPPPXGXXXGXXXPGGXPGXXPRXXPXXGXXXGPPP 762
PPPPPP P P P P G PPP
Sbjct: 732 PPPPPPAVI---VPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 929 GGPTXXXXGXXRGXGGXXPPPPPPXGXXXG 840
GGP G PPPPPP G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -2
Query: 964 GGXGGXAXXXXXGGXPXXXXGPXGXXGGXXPPPXRPGGXXRGPXXRGXXPG 812
GG GG GG GP G GG PGG GP G PG
Sbjct: 224 GGFGG-GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG-GPG 272
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -2
Query: 970 PXGGXGGXAXXXXXGGXPXXXXGPXGXXGGXXPPPXRPGGXXRGPXXRGXXPG 812
P G GG GG G G GG PGG GP G G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = -2
Query: 964 GGXGGXAXXXXXGGXPXXXXGPXGXXGGXXPPPXRPGGXXRGPXXRGXXPG 812
GG GG GG GP G GG PGG G G PG
Sbjct: 211 GGFGGEGHHH--GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 562 PPXRGRXXPPPXXRGGXPXTXPPXPP 485
PP G PPP G P + PP PP
Sbjct: 5 PP--GNPPPPPPPPGFEPPSQPPPPP 28
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -2
Query: 571 APPPPXRGRXXPPPXXRGGXPXTXPPXP 488
APP P P P G P PP P
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,671
Number of Sequences: 5004
Number of extensions: 28989
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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