Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K04
         (980 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   9.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 329 GXXXRPLSFXXXPLGGGXXXFW 394
           G    P  F   PLG G   FW
Sbjct: 312 GATSEPFPFLMLPLGAGRPAFW 333


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 571 APPPPXRGRXXPPPXXRGGXPXTXPPXPPXXRXP 470
           +P  P RG    PP    G P   PP  P  + P
Sbjct: 30  SPQAPQRGS---PPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 887  GGXXPPPPPP 858
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 510 GXPPRXXGGGXXRPRXGGGGA 572
           G PPR       +PR G G A
Sbjct: 427 GFPPRSKKNKLKKPRQGDGAA 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,755
Number of Sequences: 438
Number of extensions: 6703
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)