Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K03
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.0  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    29   5.2  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   6.9  
06_03_0905 + 25843547-25844314                                         28   9.2  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPV-XPPXSXXPFPRXXXPPXPRGXXXXX 406
           PP      +P     P  A      +GP    P   PP    P      PP P G     
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376

Query: 405 PPXP 394
           PP P
Sbjct: 377 PPPP 380


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -3

Query: 501 PXEGXPVXPPX-SXXPFPRXXXPPXPRGXXXXXPPXP 394
           P +  PV PP  S  P P+   PP P       PP P
Sbjct: 578 PLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRP 614


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -3

Query: 501  PXEGXPVXPPXSXXPFPRXXXPPXPRGXXXXXPPXP 394
            P +  P  PP    P P    PP P       PP P
Sbjct: 1150 PSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPP 1185


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXXXXP 403
           PP      SP     P  A        P +G    PP    P P    PP   G     P
Sbjct: 63  PPKGPTYPSPVTRPPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPPVTTPPVVVGPPVTYP 122

Query: 402 PXP 394
             P
Sbjct: 123 TPP 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,196
Number of Sequences: 37544
Number of extensions: 184697
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)