Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K03
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   1.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   1.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   1.2  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    31   1.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.7  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPX-SXXPFPRXXXPPXPRGXXXXX 406
           PP  G       G  P      +    P  G P  PP  S  P P    PP PR      
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPP-PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299

Query: 405 PPXP 394
           PP P
Sbjct: 300 PPPP 303



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/64 (26%), Positives = 18/64 (28%)
 Frame = -3

Query: 591 RVXPPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXX 412
           R  PP       P     P  A   +    P  G P  P     P P    PP P     
Sbjct: 229 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 288

Query: 411 XXPP 400
             PP
Sbjct: 289 PPPP 292


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPX-SXXPFPRXXXPPXPRGXXXXX 406
           PP  G       G  P      +    P  G P  PP  S  P P    PP PR      
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPP-PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320

Query: 405 PPXP 394
           PP P
Sbjct: 321 PPPP 324



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/64 (26%), Positives = 18/64 (28%)
 Frame = -3

Query: 591 RVXPPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXX 412
           R  PP       P     P  A   +    P  G P  P     P P    PP P     
Sbjct: 250 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 309

Query: 411 XXPP 400
             PP
Sbjct: 310 PPPP 313


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPX-SXXPFPRXXXPPXPRGXXXXX 406
           PP  G       G  P      +    P  G P  PP  S  P P    PP PR      
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPP-PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305

Query: 405 PPXP 394
           PP P
Sbjct: 306 PPPP 309



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/64 (26%), Positives = 18/64 (28%)
 Frame = -3

Query: 591 RVXPPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXX 412
           R  PP       P     P  A   +    P  G P  P     P P    PP P     
Sbjct: 235 RQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 294

Query: 411 XXPP 400
             PP
Sbjct: 295 PPPP 298


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/63 (31%), Positives = 21/63 (33%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXXXXP 403
           PP  G    P  G  P         +G   G P  PP      P    PP PRG     P
Sbjct: 727 PPPQGI---PPMGFDPNKPPPPMFQQGFNAGAP-PPPFGRGAGPMSSFPPPPRGGMHHMP 782

Query: 402 PXP 394
           P P
Sbjct: 783 PPP 785


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXXXXP 403
           PP       P  G  P           P  G P  PP      P    PP P G     P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785

Query: 402 PXP 394
           P P
Sbjct: 786 PPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXXXXP 403
           PP       P  G  P           P  G P  PP      P    PP P G     P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785

Query: 402 PXP 394
           P P
Sbjct: 786 PPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = -3

Query: 582 PPXXGXXXSPXXGXXPXXATXSAXXRGPXEGXPVXPPXSXXPFPRXXXPPXPRGXXXXXP 403
           PP       P  G  P           P  G P  PP      P    PP P G     P
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368

Query: 402 PXP 394
           P P
Sbjct: 369 PPP 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,075
Number of Sequences: 27780
Number of extensions: 132547
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)