Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_K01
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 306 2e-84
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 172 5e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 166 4e-42
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 129 5e-31
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 82 1e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 3e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 79 1e-15
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 3e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.097
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.39
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.6
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 27 3.6
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 27 4.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.4
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 6.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 8.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 306 bits (752), Expect = 2e-84
Identities = 139/151 (92%), Positives = 145/151 (96%)
Frame = +3
Query: 240 LFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHT 419
+FPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHT
Sbjct: 30 VFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHT 89
Query: 420 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVVIQAVLSLYASGRTT 599
FYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YV IQAVLSLYASGRTT
Sbjct: 90 FYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTT 149
Query: 600 GIVLDSGDGVSHTVPIYEGYALPHAILRLDL 692
GIVLDSGDGV+HTVPIYEGYALPHAI+RLDL
Sbjct: 150 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Score = 64.5 bits (150), Expect = 2e-11
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +1
Query: 697 GRDLTDYLMKILTERGYSFTTXGXREIVRDXKXKLCXVXL 816
GRDLTDYLMKIL ERGY+F+T REIVRD K KLC V L
Sbjct: 182 GRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVAL 221
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 172 bits (419), Expect = 5e-44
Identities = 78/147 (53%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Frame = +3
Query: 240 LFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHT 419
LFP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW +
Sbjct: 34 LFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYI 93
Query: 420 FYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVVIQAVLSLYASGRT 596
+ ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ +Q VL+LYAS RT
Sbjct: 94 YSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASART 153
Query: 597 TGIVLDSGDGVSHTVPIYEGYALPHAI 677
TGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 154 TGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 697 GRDLTDYLMKILTERGYSFTTXGXREIVRDXKXKLCXV 810
GRD+TDYL L + G+ + +EIVR+ K K C V
Sbjct: 187 GRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYV 224
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 166 bits (403), Expect = 4e-42
Identities = 76/152 (50%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Frame = +3
Query: 243 FPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHH 416
FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +
Sbjct: 29 FPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDY 88
Query: 417 TFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVVIQAVLSLYASGRT 596
TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YV IQAVLSLYA G +
Sbjct: 89 TFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLS 148
Query: 597 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 692
+G+V+DSGDGV+H VP+YE L H + RLD+
Sbjct: 149 SGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV 180
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 697 GRDLTDYLMKILTERGYSFTTXGXREIVRDXKXKLCXV 810
GRD T YL+ +L +GY+F E VR+ K KLC V
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYV 219
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 129 bits (312), Expect = 5e-31
Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 9/139 (6%)
Frame = +3
Query: 303 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 479
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 480 LNPKANREKMTQIMFETFNTPAMYVVIQAVLSLYASGRT--------TGIVLDSGDGVSH 635
LNP NRE +IMFE+FN +Y+ +QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 636 TVPIYEGYALPHAILRLDL 692
+P+ EGY + +I + L
Sbjct: 193 IIPVAEGYVIGSSIKTMPL 211
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/107 (36%), Positives = 58/107 (54%)
Frame = +3
Query: 345 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 524
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 525 ETFNTPAMYVVIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 665
E+ PA Y+ Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 80.6 bits (190), Expect = 3e-16
Identities = 43/142 (30%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Frame = +3
Query: 240 LFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHH 416
+F ++V R R + + + + VG++ + G ++ + P E +++NWD ME++ +
Sbjct: 49 VFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDY 104
Query: 417 TFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVVIQAVLSLYASGR- 593
TF +L + EHP+ +TE NP R MT+++FE +N P++ I + S Y + +
Sbjct: 105 TFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKP 163
Query: 594 -TTGIVLDSGDGVSHTVPIYEG 656
++GIVL+ G+ SH +P+ G
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 78.6 bits (185), Expect = 1e-15
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Frame = +3
Query: 264 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 437
P + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 438 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVVIQAVLSLYASGRTTGIVLDS 617
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 618 GDGVSHTVPIYEGYALPHAILRLDL 692
G + P+ +G + I + L
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSL 181
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.0 bits (124), Expect = 3e-08
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +3
Query: 360 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 527
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 528 TFNTPAMYVVIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 692
P + + ++ LYA G G+V+D G + PI +G + A +L L
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPL 226
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.097
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 420 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVVIQAVLSL 578
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + + A+ L
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHL 1453
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.39
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 520 CSKHSTRPPCTSSSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 678
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 29.1 bits (62), Expect = 0.90
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 520 CSKHSTRPPCTSSSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 678
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 532 STRPPCTSSSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 678
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +1
Query: 541 PPCTSSS---KPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 669
P C +S PC+ + PPV+C TP P C + H P
Sbjct: 610 PRCLEASFEELPCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 544 PCTSSSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 678
P T+ P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 565 PCSRCTRPVVPPVSCWTPATVSPTPCPST 651
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 349 VRIPLLLCASSPT*ESFCPIPTITP*WRGLPTIEGNSGARSIISC 215
V++ LCA S T P I W GL ++ + AR ++ C
Sbjct: 80 VKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGC 124
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 349 VRIPLLLCASSPT*ESFCPIPTITP*WRGLPTIEGNSGARSIISC 215
V++ LCA S T P + W GL ++ + AR ++ C
Sbjct: 77 VKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGC 121
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 462 LLTEAPLNPKANREKMTQIMFETFN 536
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 327 VPHLLHKSPSVPYRPSRPDGGA 262
+ L+ K+PS PY SRP A
Sbjct: 306 IDQLISKAPSYPYSSSRPSASA 327
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 655 DTHSPTPSCVWTXPGRDLTDYLMKILTERG 744
D P P + P R+L +M ++TE G
Sbjct: 179 DASVPKPQAICLAPSRELARQIMDVVTEMG 208
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 356 FEGQDTSFALCLISYIRVLLSHTDHHA 276
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 553 SSSKPCSRCTRPVVPPVSCWTPATVSPTPCP 645
S KP S+ TRP +P + T +V P P P
Sbjct: 62 SFQKPSSKATRPYIPSYTRLT-YSVPPLPIP 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,379
Number of Sequences: 5004
Number of extensions: 64102
Number of successful extensions: 212
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -