Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_K01
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.8  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   8.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 74  PXXTNSRGGPRYPILP 27
           P  TNS+  PR PILP
Sbjct: 774 PQNTNSQAIPRIPILP 789


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 432  LRVAPEEHPVLLTEAPLNPKANREKM 509
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -3

Query: 257 HDRGEQRREEHHLLRNRPCTYRSHCXPTNAATS 159
           H R +Q+ ++H  +   P + +    P  AA++
Sbjct: 222 HPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASA 254


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 833 MAXXXXXXSLXNFSKLPDGQVIPL 904
           MA      SL    +LPDGQVI +
Sbjct: 2   MATAASSSSLEKSYELPDGQVITI 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,351
Number of Sequences: 438
Number of extensions: 4925
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)