Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J23
         (1166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.71 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 26/104 (25%), Positives = 28/104 (26%), Gaps = 2/104 (1%)
 Frame = +1

Query: 412 PPXSXXPXPPXXHXPPFSXXXLXPXXXSXXPPXXXXXLXPXPPXXQXTXRXDPLSRXLXP 591
           PP    P P     PP       P   S  PP         PP         P      P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKA-PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202

Query: 592 PPXXXKTXXXXXXPXPXHXTPXXXXAPP*TRX*P--PXKPPXIP 717
           PP   +         P    P    AP  T   P  P + P IP
Sbjct: 203 PPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIP 246


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
 Frame = +3

Query: 474  PXPXXXIXXPPXXXXXSX--PLPTXXXXNXPKXPPLKXPPPXXPXXKNXXXXXXSXXXPX 647
            P P   +  PP     S   P+P       P  PP + PP   P          S   P 
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219

Query: 648  NXPXXPRPPI 677
              P    PP+
Sbjct: 1220 PTPSAGLPPV 1229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,377
Number of Sequences: 5004
Number of extensions: 15070
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)