Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J23
         (1166 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   8.3  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   8.3  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   8.3  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = +3

Query: 528 PLPTXXXXNXPKXPPLKXPPPXXPXXKNXXXXXXSXXXPXNXPXXPRPPINP 683
           P P       P+ PP + PP   P  +           P N P  P  PI P
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPP 193


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 24/95 (25%), Positives = 27/95 (28%)
 Frame = +1

Query: 412 PPXSXXPXPPXXHXPPFSXXXLXPXXXSXXPPXXXXXLXPXPPXXQXTXRXDPLSRXLXP 591
           P  S  P PP    PP +     P   +   P       P PP    T    P      P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP---PTGSPPPPPAGGSP 289

Query: 592 PPXXXKTXXXXXXPXPXHXTPXXXXAPP*TRX*PP 696
           PP   +       P P    P     PP     PP
Sbjct: 290 PP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 322


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 24/95 (25%), Positives = 27/95 (28%)
 Frame = +1

Query: 412 PPXSXXPXPPXXHXPPFSXXXLXPXXXSXXPPXXXXXLXPXPPXXQXTXRXDPLSRXLXP 591
           P  S  P PP    PP +     P   +   P       P PP    T    P      P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP---PTGSPPPPPAGGSP 310

Query: 592 PPXXXKTXXXXXXPXPXHXTPXXXXAPP*TRX*PP 696
           PP   +       P P    P     PP     PP
Sbjct: 311 PP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 343


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 24/95 (25%), Positives = 27/95 (28%)
 Frame = +1

Query: 412 PPXSXXPXPPXXHXPPFSXXXLXPXXXSXXPPXXXXXLXPXPPXXQXTXRXDPLSRXLXP 591
           P  S  P PP    PP +     P   +   P       P PP    T    P      P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP---PTGSPPPPPAGGSP 295

Query: 592 PPXXXKTXXXXXXPXPXHXTPXXXXAPP*TRX*PP 696
           PP   +       P P    P     PP     PP
Sbjct: 296 PP--PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,038
Number of Sequences: 27780
Number of extensions: 160373
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)