Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J18
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    29   4.2  
EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isofo...    29   4.2  
EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isofo...    29   4.2  

>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 187 FTNTSSSKSSAEFTTGSESRPTEKIRRFIICFPTYSSNL-EGLF*IRQNLKEFHYSXI 17
           F+++SS  S + F++ S SRPT     +      YSSN  + +F        F YS +
Sbjct: 41  FSSSSSRSSGSSFSSSSSSRPTSGTSSYRSGNTQYSSNFRQNVFHTTSTTTMFSYSPL 98


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 353 STSVGFSNPDINSCVKCG--KSSIHYDRLFC 267
           + S+G S+PD   CV CG   S  HY +  C
Sbjct: 41  AASLGNSSPDATDCVVCGDKSSGKHYGQFSC 71


>EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isoform
           protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 353 STSVGFSNPDINSCVKCG--KSSIHYDRLFC 267
           + S+G S+PD   CV CG   S  HY +  C
Sbjct: 8   AASLGNSSPDATDCVVCGDKSSGKHYGQFSC 38


>EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isoform
           protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 353 STSVGFSNPDINSCVKCG--KSSIHYDRLFC 267
           + S+G S+PD   CV CG   S  HY +  C
Sbjct: 8   AASLGNSSPDATDCVVCGDKSSGKHYGQFSC 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,272,957
Number of Sequences: 27780
Number of extensions: 164872
Number of successful extensions: 281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)