Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J12
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   120   2e-28
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   115   1e-26
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    28   1.6  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.8  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   6.5  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  120 bits (290), Expect = 2e-28
 Identities = 55/64 (85%), Positives = 62/64 (96%)
 Frame = +3

Query: 63  LALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWT 242
           LALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWT
Sbjct: 175 LALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWT 234

Query: 243 SDTQ 254
           SD +
Sbjct: 235 SDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  115 bits (276), Expect = 1e-26
 Identities = 52/64 (81%), Positives = 60/64 (93%)
 Frame = +3

Query: 63  LALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWT 242
           LALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWT
Sbjct: 174 LALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWT 233

Query: 243 SDTQ 254
           SD +
Sbjct: 234 SDAE 237


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 129 RVDTPCLANLISHNKRLRNLTPRPKPNNLNLKDSL 25
           RV+   L+ +I+H  RL  LTP  +   +NL +SL
Sbjct: 581 RVNLATLSAIITHLNRLITLTPNKETFTINLANSL 615


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 407 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 279
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 436 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 528
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,503
Number of Sequences: 5004
Number of extensions: 37415
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)