Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J09
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    32   0.13 
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    29   0.93 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    27   2.8  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   3.8  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   6.6  
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    26   6.6  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 239 PIRLAARHGLFAVVKLFIQFGADPHLLSGTGASTLQLAV 355
           PI  AA+ G    V   +Q GADP L    G + L LAV
Sbjct: 71  PIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAV 109


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 359 SGKHWNTDNWIFLLSYCDSSQLADGAAVAIVFKNVVALKQILATGRCNVHIPTSLTGKTL 538
           SGK    D WI  LS C+     D   +  + K V++++  + + RC V +   + G+  
Sbjct: 4   SGKIGEVDRWIEQLSRCEPLSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFH 63

Query: 539 D 541
           D
Sbjct: 64  D 64


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 651 TRGTLHNKITRAVSIQRVVTLQLVTEILDKYQQCSSEFSKKHIAARTYLE 800
           T  + H +IT +V       +Q + E  DK++Q   +F+KK + A++ LE
Sbjct: 498 TGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKK-LEAKSQLE 546


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   PLPLNYREFLKILVGHFNE*NEIIFYLKVEFN 104
           PLP  Y EF KIL  +F +  +I + +K   N
Sbjct: 183 PLPAEYEEFYKILCIYFPKNYDIKYIMKSVLN 214


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
 Frame = +2

Query: 176 NIDGLIEFLRSG-LNPNYE---------GGWPIRLAARHGLFAVVKLFIQFGADPHLLSG 325
           NI+  +E+LRS  L+ N++            P+  A       +V   ++ GADP +L+G
Sbjct: 405 NIEAFLEYLRSNDLSINFQFYPKNVHLHTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNG 464

Query: 326 TGASTLQLA 352
            G +  +++
Sbjct: 465 NGKTPFEIS 473


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 221 NYEGGWPIRLAARHGLFAVVKLFIQFGADPHL 316
           N  G   +  AA +G   + KL ++ G DPH+
Sbjct: 68  NESGNTAMHWAALNGHAEICKLLLEAGGDPHI 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,822
Number of Sequences: 5004
Number of extensions: 71502
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)