Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J09
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   1.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   2.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.9  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = -2

Query: 552 FANWSRVFPVRDVGICTLHRPVANICFNATTFLNTIATAAPSASCEESQYESKNIQLSVF 373
           F  + ++F    +      RP AN  + A  +   +    PSA CE +  +  +    +F
Sbjct: 189 FEKYGQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKMSWLF 248

Query: 372 Q 370
           +
Sbjct: 249 E 249


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 272 QTIHVEQPTLLATHLRSLDLSQIGEIQL 189
           Q +HV+ PT +++   S+  S+IG++ L
Sbjct: 331 QELHVDAPTWISSVTESVLKSKIGQVFL 358


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 674 NNTCSINSAGRDASVSYRDPRQ 739
           +   + N+ GR+A + YR P+Q
Sbjct: 414 SRVAAYNTYGRNAGLRYRGPKQ 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,825
Number of Sequences: 438
Number of extensions: 5206
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)