Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J07
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0574 + 34825075-34825362,34825635-34825683,34825847-348260...    31   1.2  
08_02_0092 + 12265446-12265809,12266147-12266743,12266792-122668...    29   5.0  
07_01_0968 - 8111340-8112067,8112496-8112566,8112663-8112837,811...    29   5.0  
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           29   6.7  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    28   8.8  

>03_06_0574 +
           34825075-34825362,34825635-34825683,34825847-34826021,
           34826118-34826188,34826764-34827491
          Length = 436

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 72  FHSNSVTTLLKILTYLQYADFDTSISNLSFFTVIY*SYIKXYCLQWLIPVLLIPKPVN 245
           FHSN++      L  L Y+  D  ISNL+F    + +    YC Q L+  + I  P+N
Sbjct: 129 FHSNTLNYTRPHLVELMYST-DVVISNLTFKNSPFWNIHPVYCSQVLVQHVTILAPLN 185


>08_02_0092 +
           12265446-12265809,12266147-12266743,12266792-12266861,
           12267325-12267427
          Length = 377

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 575 SIITVTHNVSDCRIIYIDNGCWLCFQI 495
           SI  ++HN++   +I+ID GC++ + I
Sbjct: 322 SIYLISHNITATFVIWIDKGCFVSWHI 348


>07_01_0968 -
           8111340-8112067,8112496-8112566,8112663-8112837,
           8112991-8113054,8113351-8113671,8114413-8114438,
           8114495-8114573
          Length = 487

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 72  FHSNSVTTLLKILTYLQYADFDTSISNLSFFTVIY*SYIKXYCLQWLIPVLLIPKPVN 245
           FH++++      L  L Y+D    ISNL+F    + +    YC Q L+  L I  P++
Sbjct: 180 FHNHTLNYTRPPLLELMYSD-RVVISNLTFMNAPFWNIHPVYCSQVLVQHLTILAPIS 236


>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 766 LNKLALLCIHNFWLSISIDSKY 831
           +N +A+LC   FWL +SI   Y
Sbjct: 119 MNIIAVLCFFRFWLGVSIGGDY 140


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -1

Query: 477 VTFLSTEFSLWKIKSTVRNHTFPFHIDSKTNNYRYRCSILKSQSLGRRRYIPY-RVSVLR 301
           + FL T     + K  +  H+  +  D  T+ +  R +++  +S    +  P  R+SVL+
Sbjct: 93  IAFLGTTAYYLRRKDALSPHSHAYSFDKYTS-WSSRSNLVSHRSSPLPQPKPKPRISVLK 151

Query: 300 KILLNITP*TLREYSPMPG 244
           + L +  P    E  P+PG
Sbjct: 152 EFLCSCNPICGNEGGPLPG 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,064
Number of Sequences: 37544
Number of extensions: 347881
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)