Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J05
         (1075 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF695435-1|ABS01473.1|  213|Homo sapiens extraembryonic spermato...    33   1.8  
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot...    31   9.5  
AB209373-1|BAD92610.1|  410|Homo sapiens CS0DA006YC23 variant pr...    31   9.5  
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.           31   9.5  

>EF695435-1|ABS01473.1|  213|Homo sapiens extraembryonic
           spermatogenesis homeobox 1-like protein protein.
          Length = 213

 Score = 33.1 bits (72), Expect = 1.8
 Identities = 27/103 (26%), Positives = 29/103 (28%), Gaps = 5/103 (4%)
 Frame = +1

Query: 610 PRXHPPXKXXTSPHXPXNXTSPXXPXXPXXXPAAXTXXPXXPXXXAXXPXDXAPX--RIV 783
           P    P      P  P     P  P  P    A     P         P    P    + 
Sbjct: 67  PMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMA 126

Query: 784 XLPXGXPXTPRXXGXXXARXXXGX---RPKXGXPXXPLPXXPP 903
            +P G P  P   G   AR   G    R   G P  PLP  PP
Sbjct: 127 PVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPP 169


>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
           protein.
          Length = 3144

 Score = 30.7 bits (66), Expect = 9.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 603 QXPAXPPPXKTRXLPSXXXKXD-IAPXPQXXPPPP 704
           Q P  PPP     LP    +   + P PQ  PPPP
Sbjct: 40  QPPPPPPPPPPPQLPQPPPQAQPLLPQPQPPPPPP 74


>AB209373-1|BAD92610.1|  410|Homo sapiens CS0DA006YC23 variant
           protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 9.5
 Identities = 27/103 (26%), Positives = 28/103 (27%), Gaps = 5/103 (4%)
 Frame = +1

Query: 610 PRXHPPXKXXTSPHX-PXNXTSPXXPXXPXXXPAAXTXXPXX---PXXXAXXPX-DXAPX 774
           P   PP      PH  P N   P  P  P   P      P     P      P     P 
Sbjct: 293 PAYGPPAHLPYHPHVYPPNPPPPPVPPPPASFPPPAIPPPTPGYPPPPPTYNPNFPPPPP 352

Query: 775 RIVXLPXGXPXTPRXXGXXXARXXXGXRPKXGXPXXPLPXXPP 903
           R+       P  P   G   A       P  G P  P P  PP
Sbjct: 353 RLPPTHAVPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIPPP 395


>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
          Length = 3144

 Score = 30.7 bits (66), Expect = 9.5
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 603 QXPAXPPPXKTRXLPSXXXKXD-IAPXPQXXPPPP 704
           Q P  PPP     LP    +   + P PQ  PPPP
Sbjct: 40  QPPPPPPPPPPPQLPQPPPQAQPLLPQPQPPPPPP 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,232,094
Number of Sequences: 237096
Number of extensions: 760453
Number of successful extensions: 2989
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2725
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14705364716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)