Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J04
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.8  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    27   3.8  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   6.6  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   8.7  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   8.7  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 637 SPADPSLVDADDRTHRSMSAPPDTPNQTKDECTQSPGADPSASRRDPV*CPTHTDIRRRP 816
           SP +P  +D     H+S    PDTP+      TQ+ G+  +      +   + +  RRR 
Sbjct: 61  SPNEPP-IDFSFLMHKSTDENPDTPSNLDSPSTQNVGSTNNTRASQSLLRRSSSFFRRRH 119

Query: 817 RQ 822
           R+
Sbjct: 120 RK 121


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = +1

Query: 106 YAHQSVYSVELCYILM--VFNLIKRQWNHLXVLDKPPEYHGDRGFPFEE-----EEGSGA 264
           Y+  S  S E+  I+   + N    +W  + V+    + H  R    EE      E   A
Sbjct: 85  YSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKALANEWKCA 144

Query: 265 WSELAARHPDIAAR 306
           W+E +ARH +  AR
Sbjct: 145 WTEASARHNENVAR 158


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
 Frame = +2

Query: 458 TAGSALATNNHNSRRPLRQLN--HSNKRPPHRLNRLRRTANTSSKPRYHSTDSETQ*T*G 631
           T  S L+  N NS   L   N  H    PP  LN+L +  +  + PR            G
Sbjct: 259 TPKSTLSKTNENSEGTLYDSNVAHGCTHPPS-LNQLNKF-HLDASPRQARPRRSVSLATG 316

Query: 632 RRVPPTRAWSMRTIGHTDLCQRPQTHLIKQKMSVHNHQEQTHQPHG 769
              P          G   L   PQ+ L    ++  + QE+TH  +G
Sbjct: 317 LNSPSVSKPPSSATG--PLYHSPQSSLTNSSVASADVQERTHNTNG 360


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 659 SMRTIGHTDLCQRPQTHLIKQKMSVHNHQEQTHQPHGETQ 778
           S+ TI    + +R Q+  ++Q ++   HQE    P+G  Q
Sbjct: 352 SLITINKMAIEERKQSRRLEQPLAESQHQEDLLNPYGVDQ 391


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 473 LATNNHNSRRPLRQLNHSN-----KRPPHRLNRLRRTANTSS 583
           L T++ N+R PLR  N SN     K   H +N ++ + + SS
Sbjct: 187 LNTSSFNTRSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,924
Number of Sequences: 5004
Number of extensions: 58692
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)