Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_J01
(1045 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 50 7e-07
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.007
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.038
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.088
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 49.6 bits (113), Expect = 7e-07
Identities = 34/133 (25%), Positives = 41/133 (30%)
Frame = +1
Query: 505 SARXSXPPAXXPXTXXNPPRTXAQTXGIXPPXXPPGXXETTXXPKXXXPPQNPXXXXPIP 684
SA PP P T PP + PP PP + + P+P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418
Query: 685 TXHXXPXSQTXGXGPAXXXAXXXRTPDXPXXPRXXPPPXPLNPQXXXXPPXXPPXXXXAP 864
T P S P+ + P P PP P+ P P PP AP
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAP----PLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 865 XPPXXPPXPXXAP 903
PP P AP
Sbjct: 475 APPPAPAPAPAAP 487
Score = 39.1 bits (87), Expect = 0.001
Identities = 37/145 (25%), Positives = 39/145 (26%), Gaps = 5/145 (3%)
Frame = +1
Query: 517 SXPPAXXPXTXXNPPRTXAQTXGIXPPXXPPGXXETTXXPKXXXP-PQNPXXXXP-IPTX 690
S PP PP PP PP T P P P P P I +
Sbjct: 228 SAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINST 287
Query: 691 HXXPXSQTXGXGPAXXXAXXXRTPDXPXXP---RXXPPPXPLNPQXXXXPPXXPPXXXXA 861
P A A + P P P PP PP PP A
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 862 PXPPXXPPXPXXAPXXXPXPPXXTP 936
PP AP P PP P
Sbjct: 348 AGSIPLPPQGRSAP--PPPPPRSAP 370
Score = 34.3 bits (75), Expect = 0.029
Identities = 44/202 (21%), Positives = 50/202 (24%), Gaps = 11/202 (5%)
Frame = +2
Query: 383 PDTPPAKGXIXXXXXXXNXXKDXPCAXPXLXXXPXXPXXXXARXALXPPPXPXRRXXXXX 562
P PP + N + P P P + + PPP P R
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349
Query: 563 XXXXXXXXYXPXXXLPXPXKPPXXRKXXSPPKTXXXPPP-----SQXNTXTXXAKXXGXX 727
P P PP S P T PPP + N G
Sbjct: 350 SIP------LPPQGRSAPPPPP----PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 728 PPXXXPXXXELQTLRXSXAXXPPRXP*TP------NXXXXPXXTPPXXXKPPXPPXXPPX 889
P P +T P P P P P PP P PP
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 890 PKXHXGXXPXPPXRLPKXPXNP 955
P P PP P P P
Sbjct: 460 PAGMPAAPPLPP-AAPAPPPAP 480
Score = 33.9 bits (74), Expect = 0.038
Identities = 42/175 (24%), Positives = 49/175 (28%), Gaps = 20/175 (11%)
Frame = +1
Query: 472 PXXPXTTGXXXSARXSXPPAXXPXTXXN---PP-RTXAQTXGIXPPXXPPGXXETTXXPK 639
P + +A PP P + N PP + + PP PP P
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL 353
Query: 640 XXX----PPQNPXXXXPIPTXHXXPXSQTXGXG--PAXXXAXXXRT----PDXPXXPRXX 789
PP P P P S + PA A R+ P R
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 790 PPPXPLNPQXXXX-----PPXXPPXXXX-APXPPXXPPXPXXAPXXXPXPPXXTP 936
PP P P PP PP AP P PP AP P P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 33.5 bits (73), Expect = 0.050
Identities = 35/153 (22%), Positives = 39/153 (25%), Gaps = 5/153 (3%)
Frame = +1
Query: 481 PXTTGXXXSARXSXPPAXXPXTXXNPPRTXAQTXGIXPPXXPPGXXETTXXPKXXXPPQ- 657
P G S+ PP + P Q PP P T P +
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIP-LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 658 --NPXXXXPIPTXHXXPXSQTXGXGPAXXXAXXXRTPDXPXX-PRXXPPPXPLN-PQXXX 825
NP P P G P P P PP P + P
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 826 XPPXXPPXXXXAPXPPXXPPXPXXAPXXXPXPP 924
P PP AP P P P P PP
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 32.7 bits (71), Expect = 0.088
Identities = 37/163 (22%), Positives = 44/163 (26%), Gaps = 1/163 (0%)
Frame = +1
Query: 472 PXXPXTTGXXXSARXSXPPAXXPXTXXNPPRTXAQTXGIXPPXXPPGXXETTXXPKXXXP 651
P P + S+ + PP NP + PP K P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Query: 652 PQNPXXXXPIPTXHXXPXSQTXGXGPAXXXAXXXRTPDXPXXPRXXPP-PXPLNPQXXXX 828
P P + G P + P P PR PL PQ
Sbjct: 314 P-------------PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSA 360
Query: 829 PPXXPPXXXXAPXPPXXPPXPXXAPXXXPXPPXXTPKXXXXSA 957
PP PP AP PP P + PP P SA
Sbjct: 361 PP--PPPPRSAPSTGRQPP-PLSSSRAVSNPPAPPPAIPGRSA 400
Score = 31.9 bits (69), Expect = 0.15
Identities = 29/117 (24%), Positives = 31/117 (26%), Gaps = 1/117 (0%)
Frame = +2
Query: 608 PXPXKPPXXRKXXSPPKTXXXP-PPSQXNTXTXXAKXXGXXPPXXXPXXXELQTLRXSXA 784
P P PP SPP + P P N PP L +
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312
Query: 785 XXPPRXP*TPNXXXXPXXTPPXXXKPPXPPXXPPXPKXHXGXXPXPPXRLPKXPXNP 955
PP P N P P PP PP G P PP P P
Sbjct: 313 PPPP--PSRRNRGKPPIGNGSSNSSLPPPP--PPPRSNAAGSIPLPPQGRSAPPPPP 365
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.3 bits (80), Expect = 0.007
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 790 PPPXPLNPQXXXXPPXXPPXXXXAPXPPXXPPXPXXAPXXXPXPPXXTP 936
PPP + P P PP PP PP P A P PP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.7 bits (71), Expect = 0.088
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 760 PDXPXXPRXXPPPXPLNPQXXXXPPXXPPXXXXAPXPPXXPPXP 891
P P PPP P+ PP PP A PP PP P
Sbjct: 742 PTPAPAPIPVPPPAPI--MGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.038
Identities = 19/68 (27%), Positives = 22/68 (32%)
Frame = +1
Query: 718 GXGPAXXXAXXXRTPDXPXXPRXXPPPXPLNPQXXXXPPXXPPXXXXAPXPPXXPPXPXX 897
G PA + P P+ P P P PP PP P P PP P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP-PPPLPAS 1738
Query: 898 APXXXPXP 921
+ P P
Sbjct: 1739 SAPSVPNP 1746
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +1
Query: 802 PLNPQXXXXPPXXPPXXXXAPXPPXXPPXPXXAPXXXPXPPXXTP 936
P+ PQ P P P PP P P AP PP P
Sbjct: 1691 PVRPQSAAPPQMSAPTP---PPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 27.1 bits (57), Expect = 4.4
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +2
Query: 791 PPRXP*T--PNXXXXPXXTPPXXXKPPXPPXXPPXPKXHXGXXPXPPXRLPKXPXNP 955
PP P + P P PP PP PP PP P P PP P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPP-PPSAPPMPAGPPSAPP-PPLPASSAPSVP 1744
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.088
Identities = 41/170 (24%), Positives = 51/170 (30%), Gaps = 13/170 (7%)
Frame = +1
Query: 463 TXTPXXPXTTGXXXSARXSXP-PAXXPXTXXNP---PRTXAQTXGIXPPXXPPGXXETTX 630
T TP P ++ SA P P+ + P P A + GI P P
Sbjct: 1047 TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPS-GIPPVPKPSVAAPPVP 1105
Query: 631 XPKXXXPP-QNPXXXXPIP--TXHXXPXSQTXGXGPAXXXAXXXRTPDXPXXPRXXPPPX 801
P PP P P+P + P G P + P P P
Sbjct: 1106 KPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPS 1165
Query: 802 ----PLNPQXXXXPPXXPPXXXXAPXPPX--XPPXPXXAPXXXPXPPXXT 933
P+ PP P P PP PP P + P PP T
Sbjct: 1166 VAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Score = 30.3 bits (65), Expect = 0.47
Identities = 35/178 (19%), Positives = 42/178 (23%), Gaps = 6/178 (3%)
Frame = +1
Query: 472 PXXPXTTGXXXSARXSXPPAXXPXTXXNPPRTXAQTXGIXPPXXPPGXXETTXXPKXXXP 651
P P +G + S P P A + G P P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS-GAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 652 -PQNPXXXXPIPTXHXXPXSQTXGXGPAXXXAXXXRTPDXPXXPRXXPPPXPLN-----P 813
P+ P+P P A P P PP P + P
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Query: 814 QXXXXPPXXPPXXXXAPXPPXXPPXPXXAPXXXPXPPXXTPKXXXXSAXXXRXGAXEP 987
+ P PP P P P PP P S R P
Sbjct: 1202 KPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
Score = 27.1 bits (57), Expect = 4.4
Identities = 22/107 (20%), Positives = 26/107 (24%)
Frame = +2
Query: 626 PXXRKXXSPPKTXXXPPPSQXNTXTXXAKXXGXXPPXXXPXXXELQTLRXSXAXXPPRXP 805
P R P + PP + PP P S A P
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066
Query: 806 *TPNXXXXPXXTPPXXXKPPXPPXXPPXPKXHXGXXPXPPXRLPKXP 946
P+ P P P PP PK P P + P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113
Score = 26.6 bits (56), Expect = 5.8
Identities = 24/111 (21%), Positives = 25/111 (22%)
Frame = +1
Query: 604 PPGXXETTXXPKXXXPPQNPXXXXPIPTXHXXPXSQTXGXGPAXXXAXXXRTPDXPXXPR 783
PP + P P P P T S P A P P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081
Query: 784 XXPPPXPLNPQXXXXPPXXPPXXXXAPXPPXXPPXPXXAPXXXPXPPXXTP 936
P P P P P P P AP P P P
Sbjct: 1082 APPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP-PVPKPSVAAP 1131
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 1.4
Identities = 30/132 (22%), Positives = 34/132 (25%), Gaps = 2/132 (1%)
Frame = +2
Query: 614 PXKPPXXRKXXSPPKTXXXPPPSQXNTXTXXAKXXGXXPPXXXPXXXELQT--LRXSXAX 787
P PP S P PPP T PP P T S
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVA 967
Query: 788 XPPRXP*TPNXXXXPXXTPPXXXKPPXPPXXPPXPKXHXGXXPXPPXRLPKXPXNPXXXX 967
R +PN TP P P H G PP + P P
Sbjct: 968 AASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKP--HGGSQIVPPPKQPANRVVPLPPT 1025
Query: 968 VXERXSRHXAXT 1003
+R S + T
Sbjct: 1026 ASQRASAYEPPT 1037
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.8
Identities = 25/79 (31%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Frame = +1
Query: 727 PAXXXAXXXRTPDXPXXPRXX-PPPXPLN--PQXXXXPPXX----PPXXXXAPX--PPXX 879
PA P PR PPP P + P PP PP AP PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 880 PPXPXXAPXXXPXPPXXTP 936
P P P P PP P
Sbjct: 188 PSLPSAVP---PMPPKVPP 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.140 0.472
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,862
Number of Sequences: 5004
Number of extensions: 21078
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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