Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_J01
         (1045 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   4.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   4.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 608 PXPXKPPXXRKXXSPPKTXXXPPP 679
           P P + P   +  SPP     PPP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +1

Query: 769 PXXPRXXPPPXPLNPQXXXXPPXXPP 846
           P  P+   PP P        PP  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = +1

Query: 778 PRXXPPPXPLNPQXXXXPPXXPPXXXXAPXPPXXPPXP 891
           P   P P P +P+    P   P        P   PP P
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = +1

Query: 778 PRXXPPPXPLNPQXXXXPPXXPPXXXXAPXPPXXPPXP 891
           P   P P P +P+    P   P        P   PP P
Sbjct: 129 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 857 KPPXPPXXPPXPKXHXGXXPXPP 925
           KP  P   PP PK      P PP
Sbjct: 63  KPYNPEHKPPGPKDLVYLEPSPP 85


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 857 KPPXPPXXPPXPKXHXGXXPXPP 925
           KP  P   PP PK      P PP
Sbjct: 64  KPYNPEHKPPGPKDLVYLEPSPP 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.140    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,417
Number of Sequences: 438
Number of extensions: 4645
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34704288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)