Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I24
         (897 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha prot...    49   3e-05
CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.                49   3e-05
BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directe...    49   3e-05
BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directe...    49   3e-05

>L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha
           protein.
          Length = 598

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 16/191 (8%)
 Frame = +1

Query: 103 LNFFGINVEQDVLIKCVNLCEENNIDAETFIEQWMAF--SLNYVNGASPNLENLDL-FVR 273
           L  FG++ E+ ++ K V LC +   + E  + + +AF  S + V   S  L + +  F+ 
Sbjct: 12  LQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFEHEFLS 71

Query: 274 KEFSKRRTNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYV---------AVTPKRV 426
           K  SK R +++ K++    A   +++         +  +L+SY          A++    
Sbjct: 72  KRLSKAR-HSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSYTTPSKGSQKRAISTPET 130

Query: 427 KIEKDATTNQND---IVPATYSPTVG-SAKYASRTNAGTVVHSYGDEKLLQELGKANSSN 594
            + K + + ++    + P+++SP+   S KY SR+N G VV S+G  + +   G+  + N
Sbjct: 131 PLTKRSVSTRSPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGVSWSGRGGAGN 190

Query: 595 DVLSLKITQVP 627
             +SLK+   P
Sbjct: 191 --ISLKVLGCP 199


>CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.
          Length = 598

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 16/191 (8%)
 Frame = +1

Query: 103 LNFFGINVEQDVLIKCVNLCEENNIDAETFIEQWMAF--SLNYVNGASPNLENLDL-FVR 273
           L  FG++ E+ ++ K V LC +   + E  + + +AF  S + V   S  L + +  F+ 
Sbjct: 12  LQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFEHEFLS 71

Query: 274 KEFSKRRTNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYV---------AVTPKRV 426
           K  SK R +++ K++    A   +++         +  +L+SY          A++    
Sbjct: 72  KRLSKAR-HSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSYTTPSKGSQKRAISTPET 130

Query: 427 KIEKDATTNQND---IVPATYSPTVG-SAKYASRTNAGTVVHSYGDEKLLQELGKANSSN 594
            + K + + ++    + P+++SP+   S KY SR+N G VV S+G  + +   G+  + N
Sbjct: 131 PLTKRSVSTRSPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGVSWSGRGGAGN 190

Query: 595 DVLSLKITQVP 627
             +SLK+   P
Sbjct: 191 --ISLKVLGCP 199


>BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 16/191 (8%)
 Frame = +1

Query: 103 LNFFGINVEQDVLIKCVNLCEENNIDAETFIEQWMAF--SLNYVNGASPNLENLDL-FVR 273
           L  FG++ E+ ++ K V LC +   + E  + + +AF  S + V   S  L + +  F+ 
Sbjct: 12  LQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFEHEFLS 71

Query: 274 KEFSKRRTNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYV---------AVTPKRV 426
           K  SK R +++ K++    A   +++         +  +L+SY          A++    
Sbjct: 72  KRLSKAR-HSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSYTTPSKGSQKRAISTPET 130

Query: 427 KIEKDATTNQND---IVPATYSPTVG-SAKYASRTNAGTVVHSYGDEKLLQELGKANSSN 594
            + K + + ++    + P+++SP+   S KY SR+N G VV S+G  + +   G+  + N
Sbjct: 131 PLTKRSVSTRSPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGVSWSGRGGAGN 190

Query: 595 DVLSLKITQVP 627
             +SLK+   P
Sbjct: 191 --ISLKVLGCP 199


>BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 48.8 bits (111), Expect = 3e-05
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 16/191 (8%)
 Frame = +1

Query: 103 LNFFGINVEQDVLIKCVNLCEENNIDAETFIEQWMAF--SLNYVNGASPNLENLDL-FVR 273
           L  FG++ E+ ++ K V LC +   + E  + + +AF  S + V   S  L + +  F+ 
Sbjct: 12  LQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFEHEFLS 71

Query: 274 KEFSKRRTNASAKETTRPAAGKSLTVYGAKATSPPDSEVLSSYV---------AVTPKRV 426
           K  SK R +++ K++    A   +++         +  +L+SY          A++    
Sbjct: 72  KRLSKAR-HSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSYTTPSKGSQKRAISTPET 130

Query: 427 KIEKDATTNQND---IVPATYSPTVG-SAKYASRTNAGTVVHSYGDEKLLQELGKANSSN 594
            + K + + ++    + P+++SP+   S KY SR+N G VV S+G  + +   G+  + N
Sbjct: 131 PLTKRSVSTRSPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGVSWSGRGGAGN 190

Query: 595 DVLSLKITQVP 627
             +SLK+   P
Sbjct: 191 --ISLKVLGCP 199


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,247,146
Number of Sequences: 237096
Number of extensions: 2624605
Number of successful extensions: 5461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5457
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)