Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I22
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   3.6  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   6.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   8.4  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 263 KELFKVPKSHFSTDFKRGSYQFDHNFLSMYVHRFLENP*TDSNN 394
           K++  + +S        G Y+ D N  S+Y H  ++NP  D NN
Sbjct: 14  KQVDSIYESRLDQFLSEGQYR-DFNLPSVYDHARIDNPSGDVNN 56


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 477 SGFLQDLIVRS*CKQDHSGSLSNKK 403
           +GFL+DL +    K  H GSL+NKK
Sbjct: 385 TGFLEDLALAF-LKARHDGSLANKK 408


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 446 DLTMRSWRNPEKSIIVKAYLEVIWGV 523
           +L++R+W+NP  S+  KA L +I  +
Sbjct: 187 NLSVRTWKNPSASVHDKALLYLILSI 212


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 303 TSKEEVINSTIIFYLCMF 356
           TS E+ +NS I+F LC+F
Sbjct: 397 TSVEKQVNSQILFLLCIF 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,097
Number of Sequences: 5004
Number of extensions: 65347
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)