Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I18
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       31   1.2  
07_01_0479 + 3606663-3607448                                           30   2.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.8  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   8.8  
07_01_0080 + 587674-588510                                             28   8.8  
02_01_0302 - 2021221-2023305                                           28   8.8  
01_01_1143 - 9064210-9065682                                           28   8.8  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = -1

Query: 621 PXXGEXXXPPXGGXKXXPPXXKPGXXXFXGGXGXXAXKKXPXXPGGGG 478
           P  G    PP GG    PP   PG      G G  A    P   GGGG
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPG-----AGGGGGARPPAPGGGGGGG 142


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/85 (29%), Positives = 29/85 (34%)
 Frame = +1

Query: 517 PXPXPPXKXPXPXFXGGGXXFXXPXGGXXXFPXXWGXPXKKIFXQRXXKGPKXXKGPXXG 696
           P P  P + P P        F  P G    FP     P           GP   +    G
Sbjct: 175 PPPMRPPQMPIP--------FQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVR---PG 223

Query: 697 VXPXGPPPLXXLKKXPPPFKGXXPP 771
           + P GPPP       PPPF+   PP
Sbjct: 224 M-PGGPPPGMRPGMPPPPFRPGMPP 247


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 26/81 (32%), Positives = 26/81 (32%)
 Frame = +2

Query: 479 PPPPGXXGFFFXAXXPXPPXKXXXPGFXXGGXXXXPPXGGXXFSPKXGXXPXKKFXXKGP 658
           PPPP        A  P PP K   P          PP G     P  G  P      KGP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPP--------PPPPKGPPPPPPAKGPPPPP--PPKGP 362

Query: 659 XKXQXPKKXPXGGFXXXAPPP 721
                P   P GG     PPP
Sbjct: 363 ---SPPPPPPPGGKKGGPPPP 380



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/53 (37%), Positives = 20/53 (37%)
 Frame = +1

Query: 472 KXPPPPXXXGXFFXGPXPXPPXKXPXPXFXGGGXXFXXPXGGXXXFPXXWGXP 630
           K PPPP        GP P PP   P P    GG     P GG    P   G P
Sbjct: 351 KGPPPPPPP----KGPSPPPP---PPPGGKKGGPPPPPPKGGASRPPAAPGVP 396


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/81 (24%), Positives = 20/81 (24%)
 Frame = +2

Query: 479 PPPPGXXGFFFXAXXPXPPXKXXXPGFXXGGXXXXPPXGGXXFSPKXGXXPXKKFXXKGP 658
           PPPP    F F    P        P          PP G     P     P        P
Sbjct: 62  PPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121

Query: 659 XKXQXPKKXPXGGFXXXAPPP 721
                P   P       APPP
Sbjct: 122 PPPPPPPTQPPPREAQLAPPP 142


>07_01_0080 + 587674-588510
          Length = 278

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 433 PXXGGXXXXFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXP 552
           P  GG          PPPP   G     P P PP   P P
Sbjct: 80  PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPP 119


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +1

Query: 478 PPPPXXXGXFFXGPXPXPPXKXPXPXFXGGGXXFXXPXG 594
           PP P        GP P PP   P P +      +  P G
Sbjct: 400 PPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSYPAPPG 438


>01_01_1143 - 9064210-9065682
          Length = 490

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 767 GXXPLXGGGXFFXXFRGGGPXGKTPXXGP 681
           G   + G G +   + GGG  G TP  GP
Sbjct: 455 GLPGMPGAGGYLGGYGGGGGYGSTPPGGP 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,151,587
Number of Sequences: 37544
Number of extensions: 311419
Number of successful extensions: 1377
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)