Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I16
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.077
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.24 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 31/83 (37%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
 Frame = -2

Query: 929 GG*GGGXPXAGG*XGRVFFXAXAGXXXXYPGGFXGGXXX--G*XXXXGGGPXXRXGXGXX 756
           GG GG  P  GG  G   F    G      GGF GG     G     GGGP    G G  
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGE-GHHHGGHGGFGGGPGGFEGGPGGFGGGP---GGFGGG 250

Query: 755 XXXXGGGXGGRXKGXKG-PXPFW 690
               GGG GG   G  G   P W
Sbjct: 251 LGGFGGGPGGFGGGPGGHGGPGW 273


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.077
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +1

Query: 727 PPXPPPXXXXXKPXPXRXXGPPPXXIXYPXXXPPXXPPG 843
           PP PPP      P P     PPP  I      PP  PPG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI-MGGPPPPPPPPG 769


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = -2

Query: 839 GGFXGGXXXG*XXXXGGGPXXRXGXGXXXXXXGGGXGGRXKGXKG 705
           GGF GG         GG    R G G      GG  GGR  G KG
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG-GAKG 69


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = -2

Query: 839 GGFXGGXXXG*XXXXGGGPXXRXGXGXXXXXXGGGXGGRXKGXKG 705
           GGF GG   G     GG      G G      GG  GG   G +G
Sbjct: 141 GGFRGGRG-GSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 22/84 (26%), Positives = 22/84 (26%), Gaps = 2/84 (2%)
 Frame = +1

Query: 643 PPXTXNX*TXAPXXXGQKGXGPFXPFXLPPXPPPXXXXXKPXPXRXXGPPPXXIXYPXXX 822
           PP      T  P         P  P  LPP  PP      P         P     P   
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 823 P--PXXPPG*XXXXPAXAXKKTRP 888
           P  P  PP      PA A     P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 6/54 (11%)
 Frame = +1

Query: 697  GXGPFXPFXLPPX------PPPXXXXXKPXPXRXXGPPPXXIXYPXXXPPXXPP 840
            G  P  P   PP       PP       P P     PPP     P   P   PP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,514,479
Number of Sequences: 5004
Number of extensions: 16028
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)