Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I15
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...   104   2e-23
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.69 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   4.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   4.8  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score =  104 bits (249), Expect = 2e-23
 Identities = 49/82 (59%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
 Frame = +2

Query: 518 LDFRIGKIVEISKHPDADSLYVEKIDCGE-ENPRTVVSGLVNHVPIDEMRERIVMVLCNL 694
           +DFRIG I +  KHP+ADSLYV  I CG+ E PRTV SGLV ++P+++M++R V+V+ NL
Sbjct: 282 IDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVANL 341

Query: 695 KPVKMRXVTSEAMVMCASSAEK 760
           KPV MR V S+AMV CASS +K
Sbjct: 342 KPVNMRSVKSQAMVFCASSPDK 363


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 551 SKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 673
           SK P      ++ IDC EE  + ++  +V  VP+DE+ E +
Sbjct: 807 SKTPQVVGALLD-IDCDEELVQNLLMSVVGQVPVDELVEEV 846


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 548 ISKHPDADSLYVEKID 595
           I K PD +SLY+EK D
Sbjct: 193 IQKEPDLESLYIEKTD 208


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 569  DSLYVEKIDCGEENPRTVVSGLVNHVPI-DEMRERIVMVLCNL 694
            DS ++EK+ C         S L NH+ + D  R+  +  LC+L
Sbjct: 1001 DSWFLEKLPCPLTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHL 1043


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,269
Number of Sequences: 5004
Number of extensions: 50444
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)