Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I10
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...   104   2e-23
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    31   0.30 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   5.0  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   8.7  

>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score =  104 bits (250), Expect = 2e-23
 Identities = 60/129 (46%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
 Frame = +1

Query: 352 LVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNK 531
           LVAVSK  PVE ++EAYNAGQRHFGENY+ E   K    L+ +   D++WHFIG LQ++K
Sbjct: 26  LVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE--LMPD---DVQWHFIGSLQSSK 80

Query: 532 INKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEP-- 705
             K+     L+ +ET+D+EK A  +N      +     L V +QVNTSGE+ K G+ P  
Sbjct: 81  CKKIASVKNLYSIETIDTEKKARLVNSAREALQLP---LNVYIQVNTSGEENKGGVTPSK 137

Query: 706 -LETTKAVE 729
            LE  K V+
Sbjct: 138 VLELCKQVQ 146


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 310 VARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKAS 462
           +++   D+P+ AP  VAV++ +P EL     N  QR   E Y  E   K++
Sbjct: 374 ISKTFDDVPKRAP--VAVTEFRPSELFELNENKSQRSLAEEYEEEFLKKSN 422


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 361  QQPILVLSEVGLYFFW 314
            ++P L+ + VGLYFFW
Sbjct: 1090 EKPYLIHNVVGLYFFW 1105


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 589 KLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHIL 738
           + A  +  +  K  K+   L   + ++  GE+     + +  TK VEHIL
Sbjct: 337 RAAKRVTSKLEKVSKQNPTLVYPIAIHLLGERGSLNFDRVTNTKLVEHIL 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,299
Number of Sequences: 5004
Number of extensions: 67796
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)