Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I09
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    29   0.68 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   1.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   3.6  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   3.6  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   4.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   6.4  

>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 454 DNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQKPLFN 579
           D+ R    QD+D D K+ S ++S +  Q  N+ +  + PL N
Sbjct: 466 DDLRNVFNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKNPLMN 507


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
 Frame = +2

Query: 176 TIFETQSG---VPTMKTTEMNYTLGTRCPLS*IQWISTEISPNICT-KCFDRLEACSVTY 343
           T +ET+S    VPT      ++T  T   L+     S+  S +  T        A S   
Sbjct: 252 TFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQ 311

Query: 344 SHFSTMKTLTFPESATCLPTKVPTTVTSEITI*NPAMTITERLS 475
              S+  T + P  ++ LPT  P+++++E+ +     TIT+  S
Sbjct: 312 PTTSSPITTSAPSLSSALPTTYPSSLSTEVEVEYFTKTITDTSS 355


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 725 LSPGPDVTVSSVTSLPFLTILLVSIVPSGFLTLVVIIV*QNDLPGT 588
           L+  PDV V S+   PF+   + +++P+   +LVV+   ++   GT
Sbjct: 262 LAANPDVGVLSIRIFPFVAENIFNVLPTTCKSLVVLSQVRSTAVGT 307


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 413 LEPSSEGKSLIPGKSKFSSWKNDCTSPNMLPNDRNISCICLVKSLWR 273
           L P   G+ +IP +     W   C S NM P D N +   L+K   R
Sbjct: 500 LIPVKNGRRVIP-RGLIGRWNRICASHNMDPEDVNNASPELLKEFVR 545


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 196 WGSDDEDDGDELYSRNE 246
           W +D+EDDG++L S +E
Sbjct: 348 WVADEEDDGEDLESEDE 364


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 660 CLYCSIRFLNTCCNNSLTE*SS 595
           CL CS + ++T C+NSL   SS
Sbjct: 561 CLNCSNKIIHTVCHNSLIYFSS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,521,070
Number of Sequences: 5004
Number of extensions: 77882
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)