Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I08
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    25   2.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    25   2.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    25   2.6  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    24   7.2  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 25.0 bits (52), Expect(2) = 2.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 760 GGXXPPPPPP 789
           GG  PPPPPP
Sbjct: 756 GGPPPPPPPP 765



 Score = 23.0 bits (47), Expect(2) = 2.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 763 GXXPPPPPPXKXXXF 807
           G  PPPPPP     F
Sbjct: 766 GGCPPPPPPPPPGGF 780


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 25.0 bits (52), Expect(2) = 2.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 760 GGXXPPPPPP 789
           GG  PPPPPP
Sbjct: 756 GGPPPPPPPP 765



 Score = 23.0 bits (47), Expect(2) = 2.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 763 GXXPPPPPPXKXXXF 807
           G  PPPPPP     F
Sbjct: 766 GGCPPPPPPPPPGGF 780


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 25.0 bits (52), Expect(2) = 2.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 760 GGXXPPPPPP 789
           GG  PPPPPP
Sbjct: 339 GGPPPPPPPP 348



 Score = 23.0 bits (47), Expect(2) = 2.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 763 GXXPPPPPPXKXXXF 807
           G  PPPPPP     F
Sbjct: 349 GGCPPPPPPPPPGGF 363


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 23.8 bits (49), Expect(2) = 7.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 771 PPPPPPXXXXXFFF 812
           PPPPPP     F F
Sbjct: 576 PPPPPPPPPPSFMF 589



 Score = 23.8 bits (49), Expect(2) = 7.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 772 PPPPPPXKXXXFFF 813
           PPPPPP     F F
Sbjct: 576 PPPPPPPPPPSFMF 589



 Score = 22.6 bits (46), Expect(2) = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 759 GGXXPPPPPP 788
           G   PPPPPP
Sbjct: 534 GAPTPPPPPP 543



 Score = 22.6 bits (46), Expect(2) = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 760 GGXXPPPPPP 789
           G   PPPPPP
Sbjct: 534 GAPTPPPPPP 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,515,061
Number of Sequences: 27780
Number of extensions: 89383
Number of successful extensions: 1757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)