Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I07
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   8.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   8.5  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    26   8.5  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 455 HGYISRQFTRRYALPENCNPDT 520
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 560 IAPRT-PAATKNERAVPITQTGPVRKEIKEPTAEVE 664
           +AP + PA +K     P+T  GP+   I+  T  +E
Sbjct: 675 LAPMSIPAISKRSLTKPVTSCGPLLNNIRRLTVNLE 710


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 569 RTPAATKNERAVPITQTGPVRKEIKE 646
           R PAA + +  VPITQ    + E+K+
Sbjct: 172 RRPAAMRAQTLVPITQPDSKKNELKQ 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,557
Number of Sequences: 5004
Number of extensions: 34988
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)