Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_I04
(955 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 31 1.8
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 30 3.1
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 4.1
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 29 5.5
07_03_1350 - 25955624-25955842,25955877-25955922,25956456-25956751 29 7.2
06_02_0361 - 15168735-15168754,15168783-15169248 29 7.2
02_03_0099 + 15206282-15206917 29 7.2
02_01_0679 - 5048653-5051394 29 7.2
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 9.5
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 30.7 bits (66), Expect = 1.8
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 576 KWWALTSSNGVCILESSLWTAFRFRT*LICSTASFRFVVVMASMTV*KK-LRAVFKHYNV 752
K W L GV I+E WT++R R L+ A F ++ ++ L +V
Sbjct: 226 KIWRLLRPGGVFIMEPQPWTSYR-RNRLVSEVAKENFNTILIHPDKFREILLDKIGFRSV 284
Query: 753 HAAAVKLQGSIHDPGRPAELKGYLLNT 833
KL+G++ RP E+ ++ T
Sbjct: 285 EVVTDKLEGAVTGFDRPIEVYHKVMGT 311
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 589 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 678
L+R +GC + VPC P SG+E F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 4.1
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +2
Query: 356 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 523
++E+WSGA SA K KK + ++ DG S VEIV+ + L
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676
Query: 524 LDYSIGEKN 550
++ S E N
Sbjct: 677 VELSFAENN 685
>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 648 GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 553
G GT S G+ YT H K P +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035
>07_03_1350 - 25955624-25955842,25955877-25955922,25956456-25956751
Length = 186
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 267 SWL*AVAAWLTSTIANVRSPQPRFGXPW 184
SWL AV AW +R P+PR W
Sbjct: 77 SWLDAVRAWAKLACLKLRPPEPREKVAW 104
>06_02_0361 - 15168735-15168754,15168783-15169248
Length = 161
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 704 NDSLKEIEGSFQALQRSCSGREASRFYPRS 793
ND+ + SF+ Q SCS +E+S F P S
Sbjct: 91 NDTFEHESFSFKFPQESCSHKESSEFCPNS 120
>02_03_0099 + 15206282-15206917
Length = 211
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 338 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 505
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 634 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 491
+ REL IH +V +S +LEG I ++ R + T SY
Sbjct: 43 IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 614 PRKFPVDRVPVPNLTHLLYGFIPICGG 694
P +F ++ PVPN T+ Y FIP GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,833,586
Number of Sequences: 37544
Number of extensions: 505303
Number of successful extensions: 1493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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