Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_I04
(955 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF491813-1|AAM09558.1| 2113|Homo sapiens Down syndrome cell adhe... 36 0.29
AF334384-1|AAL57166.1| 2053|Homo sapiens Down syndrome cell adhe... 36 0.29
AF304305-1|AAN32614.1| 1842|Homo sapiens Down syndrome cell adhe... 36 0.29
AF304304-1|AAN32613.1| 2053|Homo sapiens Down syndrome cell adhe... 36 0.29
AB032958-1|BAA86446.2| 2092|Homo sapiens KIAA1132 protein protein. 36 0.29
AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down synd... 32 3.5
AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhe... 32 3.5
AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhe... 32 3.5
AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhe... 32 3.5
AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhe... 32 3.5
>AF491813-1|AAM09558.1| 2113|Homo sapiens Down syndrome cell adhesion
molecule 2 protein.
Length = 2113
Score = 35.5 bits (78), Expect = 0.29
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = +2
Query: 266 LVTKKDAADVSVNWNVWTGDAADKSRVLLD--KKEVWSGAGSATSAAFKV-----KKGGR 424
L T ++ +N W + ++L+ K W+ G +++ +V ++
Sbjct: 1547 LFTHINSTHARLNLQGWNNGGCPITAIVLEYRPKGTWAWQGLRANSSGEVFLTELREATW 1606
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 544
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1607 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1645
>AF334384-1|AAL57166.1| 2053|Homo sapiens Down syndrome cell adhesion
molecule DSCAML1 protein.
Length = 2053
Score = 35.5 bits (78), Expect = 0.29
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = +2
Query: 266 LVTKKDAADVSVNWNVWTGDAADKSRVLLD--KKEVWSGAGSATSAAFKV-----KKGGR 424
L T ++ +N W + ++L+ K W+ G +++ +V ++
Sbjct: 1487 LFTHINSTHARLNLQGWNNGGCPITAIVLEYRPKGTWAWQGLRANSSGEVFLTELREATW 1546
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 544
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1547 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1585
>AF304305-1|AAN32614.1| 1842|Homo sapiens Down syndrome cell adhesion
molecule like-protein 1b protein.
Length = 1842
Score = 35.5 bits (78), Expect = 0.29
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = +2
Query: 266 LVTKKDAADVSVNWNVWTGDAADKSRVLLD--KKEVWSGAGSATSAAFKV-----KKGGR 424
L T ++ +N W + ++L+ K W+ G +++ +V ++
Sbjct: 1276 LFTHINSTHARLNLQGWNNGGCPITAIVLEYRPKGTWAWQGLRANSSGEVFLTELREATW 1335
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 544
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1336 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1374
>AF304304-1|AAN32613.1| 2053|Homo sapiens Down syndrome cell adhesion
molecule like-protein 1a protein.
Length = 2053
Score = 35.5 bits (78), Expect = 0.29
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = +2
Query: 266 LVTKKDAADVSVNWNVWTGDAADKSRVLLD--KKEVWSGAGSATSAAFKV-----KKGGR 424
L T ++ +N W + ++L+ K W+ G +++ +V ++
Sbjct: 1487 LFTHINSTHARLNLQGWNNGGCPITAIVLEYRPKGTWAWQGLRANSSGEVFLTELREATW 1546
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 544
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1547 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1585
>AB032958-1|BAA86446.2| 2092|Homo sapiens KIAA1132 protein protein.
Length = 2092
Score = 35.5 bits (78), Expect = 0.29
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = +2
Query: 266 LVTKKDAADVSVNWNVWTGDAADKSRVLLD--KKEVWSGAGSATSAAFKV-----KKGGR 424
L T ++ +N W + ++L+ K W+ G +++ +V ++
Sbjct: 1526 LFTHINSTHARLNLQGWNNGGCPITAIVLEYRPKGTWAWQGLRANSSGEVFLTELREATW 1585
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 544
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1586 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1624
>AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down
syndrome cell adhesion molecule protein.
Length = 1029
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSG 574
Y++Q+ +CNS GC+ + + DGS + PL S+ + + G
Sbjct: 561 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSVVQNEEGLTTNEG 609
>AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhesion
molecule splice variant protein.
Length = 1746
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSG 574
Y++Q+ +CNS GC+ + + DGS + PL S+ + + G
Sbjct: 1296 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSVVQNEEGLTTNEG 1344
>AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 2012
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSG 574
Y++Q+ +CNS GC+ + + DGS + PL S+ + + G
Sbjct: 1544 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSVVQNEEGLTTNEG 1592
>AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 1896
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSG 574
Y++Q+ +CNS GC+ + + DGS + PL S+ + + G
Sbjct: 1530 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSVVQNEEGLTTNEG 1578
>AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhesion
molecule isoform CHD2-42 precursor variant protein.
Length = 2023
Score = 31.9 bits (69), Expect = 3.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 425 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSG 574
Y++Q+ +CNS GC+ + + DGS + PL S+ + + G
Sbjct: 1555 YELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPPLIKSVVQNEEGLTTNEG 1603
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,320,358
Number of Sequences: 237096
Number of extensions: 2781533
Number of successful extensions: 6211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6211
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -