Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I04
         (955 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    30   2.1  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    29   6.5  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    29   6.5  
AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans Phosphodieste...    28   8.6  
AC024877-3|AAF60898.1|  760|Caenorhabditis elegans Phosphodieste...    28   8.6  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -2

Query: 528  SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFLS 352
            S   K L   +   +ST +  ++ S LQS   + Y P F     A++A  +  + T+  S
Sbjct: 944  SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003

Query: 351  SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 262
            + + D+  AS +  H+ + + E      L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 216 RSPQPRFGXPWRAAGADGERGHREYERYHPMP 121
           RSP+ R+G      G  G   +++Y+R +P P
Sbjct: 43  RSPRARYGGGGGGGGGGGRGRNQQYDRENPQP 74


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = +2

Query: 305 WNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVE 484
           W  W G   +   +   KKEV      + + A K+ K  R        +SDG S S G E
Sbjct: 413 WTYWYGGGRELW-IPKKKKEVPKKRRQSLADASKIAKRARLGASSTATDSDGSSGSSGSE 471

Query: 485 IVVADTDGSHLRPLDYSI 538
                +      P  Y++
Sbjct: 472 EATEGSSFMRALPAGYTV 489


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
 Frame = +2

Query: 299 VNWNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEG 478
           V++  W G  +D     L  ++ WS      +  ++ + G +    + +    G    +G
Sbjct: 408 VDFGTWGGGYSDN----LGVRDFWSQTQEYGANWYEGQYGYKTGWSIPIVQGIGVEGGQG 463

Query: 479 VEIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGV-YPRKFPVDRVPVPNL 655
            ++ V   +G   RP+  + G    PF   + + VG  ++  GV + + F V  V V   
Sbjct: 464 TQVSVPIKEGELGRPISVTNGYHVGPFMGLADR-VGVDWLNGGVSWNKGFAVPFVGVGVN 522

Query: 656 THLLYGF 676
           T    GF
Sbjct: 523 TGTAVGF 529


>AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoformb protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 729 AVFKHYNV-HAAAVKLQGSIHDPGRPAELKGYLLNTTVS 842
           +V  H N  HA A  L  ++HD   P     YL+NT  S
Sbjct: 522 SVAVHVNESHAVAALLAAAVHDLDHPGRGNAYLINTRQS 560


>AC024877-3|AAF60898.1|  760|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoforma protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 729 AVFKHYNV-HAAAVKLQGSIHDPGRPAELKGYLLNTTVS 842
           +V  H N  HA A  L  ++HD   P     YL+NT  S
Sbjct: 522 SVAVHVNESHAVAALLAAAVHDLDHPGRGNAYLINTRQS 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,228,157
Number of Sequences: 27780
Number of extensions: 387420
Number of successful extensions: 1113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)