Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_I02
         (1072 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     31   2.1  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    29   6.3  

>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 471 FFFFFXXFFSXXXXXXFFFFFXXF 400
           FFFFF  FF       FFFFF  F
Sbjct: 62  FFFFFFFFFFFFFFFFFFFFFFFF 85



 Score = 30.7 bits (66), Expect = 2.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 471 FFFFFXXFFSXXXXXXFFFFFXXF 400
           FFFFF  FF       FFFFF  F
Sbjct: 63  FFFFFFFFFFFFFFFFFFFFFFFF 86


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 472 FFFFFXXXFFXXXXXXXFFFFF 407
           FFFFF   FF       FFFFF
Sbjct: 87  FFFFFFFFFFFFFFFFFFFFFF 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.148    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,708,818
Number of Sequences: 37544
Number of extensions: 81079
Number of successful extensions: 1288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3187874508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)