Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_I01
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 200 2e-51
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 198 5e-51
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 197 9e-51
06_03_0290 - 19193707-19193752,19193822-19194090 28 8.8
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 28 8.8
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 200 bits (487), Expect = 2e-51
Identities = 97/161 (60%), Positives = 125/161 (77%)
Frame = +1
Query: 286 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 465
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 466 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 645
+VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 646 ITRDVTNSELREVVNKLIPDSIAKDIEXXCHGIYPLRDVCI 768
+ ++ +L+E+V+K IP+ I K+IE I+PL++V +
Sbjct: 172 MANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFV 212
Score = 59.7 bits (138), Expect = 3e-09
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +3
Query: 186 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 290
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQG +
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTK 55
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 198 bits (483), Expect = 5e-51
Identities = 98/161 (60%), Positives = 123/161 (76%)
Frame = +1
Query: 286 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 465
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 466 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 645
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 646 ITRDVTNSELREVVNKLIPDSIAKDIEXXCHGIYPLRDVCI 768
+ + +L+E+V+K IP+ I K+IE I+PL++V I
Sbjct: 172 MANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFI 212
Score = 60.1 bits (139), Expect = 2e-09
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +3
Query: 186 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 290
VDPF++KDWYD+KAP++FS R +G TLV+RTQG +
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTK 55
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 197 bits (481), Expect = 9e-51
Identities = 96/161 (59%), Positives = 124/161 (77%)
Frame = +1
Query: 286 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 465
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 466 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 645
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 646 ITRDVTNSELREVVNKLIPDSIAKDIEXXCHGIYPLRDVCI 768
+ ++ +L+E+V+K IP+ I K+IE I+PL++V +
Sbjct: 172 MVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFV 212
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 186 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 290
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQG +
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTK 55
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 422 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 511
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 190 THSLAKIGTMSRLRLCSARGKSAPRLSTVPRXTKIASEGLKGRVF 324
T +LA I S++ LCS PRLS ++ G G +F
Sbjct: 374 TQTLASINITSKVVLCSPPSLMPPRLSLGDIIGRVIKAGANGLIF 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,161,502
Number of Sequences: 37544
Number of extensions: 457510
Number of successful extensions: 1222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -