Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H24
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    32   0.68 
08_02_0238 + 14665813-14668798,14669088-14669125                       30   2.8  

>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 371 ASAKPGTDXXGGPLERINLSXEAXXXRRXCTALCGRREQTLSP 243
           A+    T   GGP  R+++S  +   RR C AL  R  +  SP
Sbjct: 4   AAVGEATPPPGGPPSRVSVSSSSSTPRRRCAALTSRFREPASP 46


>08_02_0238 + 14665813-14668798,14669088-14669125
          Length = 1007

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 140 DFEQLKDIANKLRIDSI-VATNASKSGHPTSCASMAEIMSVLFFHTMRYXISGP 298
           D+  +  +AN  R++ + +ATN  +   P+S  S+A  +  L+ H     ISGP
Sbjct: 445 DWSFMSSLANCTRLEVLSLATNKLQGSLPSSIGSLANTLGALWLHANE--ISGP 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,463,450
Number of Sequences: 37544
Number of extensions: 460132
Number of successful extensions: 867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)