Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H23
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    46   1e-05
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    46   1e-05

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +1

Query: 169 WSXGKVRDKLNNQVXFDKPTYXKLYKEXPQYKLITPAVVSXRXKVRXSL 315
           WS GKV+DK  +   FDK    ++ KE P +K I+ +V+  R K+  SL
Sbjct: 7   WSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSL 55


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +1

Query: 169 WSXGKVRDKLNNQVXFDKPTYXKLYKEXPQYKLITPAVVSXRXKVRXSL 315
           WS GKV+DK  +   FDK    ++ KE P +K I+ +V+  R K+  SL
Sbjct: 7   WSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,305
Number of Sequences: 5004
Number of extensions: 27248
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)