Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H22
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.22 
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   6.2  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 479 PPPPGKXXXFXGPXXLXPPXNPRPPXFXXGXGFXXPP 589
           PPPP       GP    PP   RPP    G G   PP
Sbjct: 348 PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 477 PPPPRXXGXXFXXPXPXPPXKTPGP 551
           PPPP   G  +  P P PP +TPGP
Sbjct: 287 PPPPPSSGM-WPPPPPPPPGRTPGP 310


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +2

Query: 479 PPPPGKXXXFXGPXXLXPPXNPRPPXFXXGXGFXXPP 589
           PPPP       GP    PP   RPP    G G   PP
Sbjct: 358 PPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 477 PPPPRXXGXXFXXPXPXPPXKTPGP 551
           PPPP   G  +  P P PP +TPGP
Sbjct: 297 PPPPPSSGM-WPPPPPPPPGRTPGP 320


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
 Frame = +2

Query: 479 PPPPGKXXXFXG---PXXLXPPXNPRPPXFXXGXGFXXPPXGVXXFXPXXGXXPXKNFLX 649
           PPP G    + G   P          PP      GF  PP G     P  G  P  +F  
Sbjct: 296 PPPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPPQG-----PPQGGPPQGSFGA 350

Query: 650 KXPKRXQTPKRXXXGG 697
             P++   P     GG
Sbjct: 351 PPPQQFHAPSPQSFGG 366


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 477 PPPPRXXGXXFXXPXPXPPXKTPGPRXXG 563
           PPPP   G     P P PP    GP   G
Sbjct: 42  PPPPPCGGGYEAPPPPPPPSYAGGPSYAG 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,724,582
Number of Sequences: 27780
Number of extensions: 144996
Number of successful extensions: 999
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)