Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H21
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    32   0.11 
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    28   2.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   9.1  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = +2

Query: 287 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWTSXHWQQLDMETKTQMATEYQKDL 466
           N PKR ++ F  F  + R  +   NP  +     +     W++L    +     + ++D 
Sbjct: 14  NTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDK 73

Query: 467 EDYNXIKAMYETSLXEEHK 523
           E Y   +  Y+T L    K
Sbjct: 74  ERYERERKEYDTKLANGEK 92


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 437 QMATEYQKDLEDYNXIKAMY 496
           ++A ++ +DL DYN IK +Y
Sbjct: 26  EVAVDFDRDLSDYNTIKGVY 45


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 682 GSLVXDPXLEXHGISSMKNIGXVGRPRFP 596
           G +  DP +  H  SSM+ I  +  PRFP
Sbjct: 552 GLVHPDPLVASHARSSMQTIESLIHPRFP 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,963
Number of Sequences: 5004
Number of extensions: 41452
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)