Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_H21
(966 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 44 1e-04
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 41 0.001
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 40 0.002
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 38 0.012
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 38 0.016
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 36 0.037
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 35 0.11
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 33 0.26
08_02_0610 + 19307537-19308011,19308187-19310846 29 7.3
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 281 GLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWTSXH-WQQLDMETKTQ 439
G KPKR LTPFF F+++ RP + K+P A+ + W+ + E K Q
Sbjct: 21 GAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQ 74
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 287 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWTSXHWQQLDMETK-------TQMA 445
N+PK+P + F F + R L + PG++S A S W++L K +
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471
Query: 446 TEYQKDLEDYNXIKA 490
Y++D+E+Y A
Sbjct: 472 AAYKRDMEEYTKAAA 486
Score = 39.1 bits (87), Expect = 0.005
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 287 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWTSXHWQQLDMETKTQMATEYQKDL 466
+KPK+P++ +F + Q R AL+A+ + I T W+ + K +K
Sbjct: 283 SKPKQPMSAYFVYTQQRRAALVAEKKNVPEIGRI--TGEEWKAMSEAEKAPFEAAARKQR 340
Query: 467 EDYNXIKAMYETSLXEE 517
E+Y A Y EE
Sbjct: 341 EEYQVEMAAYRQRKQEE 357
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +2
Query: 290 KPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWTSXH-WQQLDMETKTQMATEYQKDL 466
KPKRP + FF FMS+ R A +P S A++ + W+ + + K + +
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKAGQKK 91
Query: 467 EDYNXIKAMYETSLXEEHKAXIKXXNXXPGTGPXKTQ 577
+DY KA ++ +E + K G G K++
Sbjct: 92 QDYEKTKANFD---KKESTSSKKAKTHDDGEGSDKSK 125
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 37.9 bits (84), Expect = 0.012
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = +2
Query: 257 KKSAEHRLGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWTSXHWQQLDMETKT 436
K+ + + N PKR + PF F R L NP +++ WQ++ E K
Sbjct: 546 KRKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQ 605
Query: 437 QMATEYQKDLEDYNXIKAMY 496
+ Q D + Y A Y
Sbjct: 606 PYVEQSQVDKKRYAEESAAY 625
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 37.5 bits (83), Expect = 0.016
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +2
Query: 257 KKSAEHRLGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWTSXHWQQLDMETKT 436
K+ + + N PKR +TPF F R + NP + + WQ++ E K
Sbjct: 587 KRKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQ 646
Query: 437 QMATEYQKDLEDYNXIKAMY 496
+ Q D + Y A+Y
Sbjct: 647 PYIQQSQVDKKRYEKESAVY 666
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 36.3 bits (80), Expect = 0.037
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = +2
Query: 254 TKKSAEHRLGLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWT-SXHWQQLDMET 430
++K + + +PK+P T FF FM R +NP + S + W + E
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEE 95
Query: 431 K-------TQMATEYQKDLEDYNXIKAMYETS 505
+ T+ EY+K + +++ K E S
Sbjct: 96 RVKYYDIATEKRAEYEKAVAEFDKKKESGELS 127
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 34.7 bits (76), Expect = 0.11
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 281 GLNKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAIAWT-SXHWQQLDMETK 433
G K KRP T FF FMS R A++P S A+A W+ + E K
Sbjct: 88 GAKKGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDK 139
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 33.5 bits (73), Expect = 0.26
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 287 NKPKRPLTPFFKFMSQMRPALLAKNPGISSKXAI 388
NKPKRP + FF FM Q R K+P + I
Sbjct: 33 NKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVI 66
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 402 FDVHAIAXLDDMPGFLARRAGRICDMNLKNGVRG 301
F+V A A L + P A GRICD +GVRG
Sbjct: 857 FEVSAFAFLAEPPAAPAAAGGRICDA-CGDGVRG 889
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,601
Number of Sequences: 37544
Number of extensions: 285494
Number of successful extensions: 398
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -