Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_H19
(984 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.9
03_01_0515 - 3864796-3865425 31 1.9
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 30 3.3
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 7.5
07_03_1136 + 24218601-24218734,24218769-24219906 29 7.5
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 7.5
06_02_0175 - 12624608-12625297 29 7.5
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 9.9
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.9
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +2
Query: 563 PXAPPXSRXGPXTLXXXXXVXXPPPXXKALXPXXX*PPSPPXXXXXKXLPXXXPSXXPPX 742
P PP P L PPP PP PP LP P PP
Sbjct: 585 PPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPS 644
Query: 743 XP 748
P
Sbjct: 645 LP 646
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.7 bits (66), Expect = 1.9
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = +2
Query: 563 PXAPPXSRXGPXTLXXXXXVXXPPPXXKALXPXXX*PPSPPXXXXXKXLPXXXPSXXPPX 742
P APP S + PPP ++ PP PP P P PP
Sbjct: 50 PLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPP 109
Query: 743 XP 748
P
Sbjct: 110 SP 111
Score = 29.5 bits (63), Expect = 4.3
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Frame = +2
Query: 560 APXAPPXSRXGPXTLXXXXXVXXPPPXXKALXPXXX*PPSPPXXXXXKXLPXXXPSXXPP 739
+P +PP P PPP A P PP PP P P PP
Sbjct: 38 SPPSPPTEASPPPLAPPPSVTSSPPPP--AAGPLMPPPPPPPSVTSSPPPPPLPPPPPPP 95
Query: 740 XX-PXXXPXS 766
P P S
Sbjct: 96 AASPPPPPPS 105
Score = 29.5 bits (63), Expect = 4.3
Identities = 18/58 (31%), Positives = 19/58 (32%)
Frame = +2
Query: 563 PXAPPXSRXGPXTLXXXXXVXXPPPXXKALXPXXX*PPSPPXXXXXKXLPXXXPSXXP 736
P PP T PPP A P PPSPP K P P+ P
Sbjct: 68 PLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPP-PPSPPPPSPVKSSPPPPPAWSP 124
>10_07_0107 -
12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 632 PPXXKALXPXXX*PPSPPXXXXXKXLPXXXPSXXPPXXPXXXP 760
P +A+ PPSPP + LP P PP P P
Sbjct: 557 PSSSQAMTAAAPAPPSPPEPPSPRHLPSPPPLRSPPRQPTPPP 599
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 7.5
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +2
Query: 629 PPPXXKALXPXXX*PPSPPXXXXXKXLPXXXPSXXPPXXPXXXPXSRAXL 778
PPP +L P PP P + P P PP P P S + L
Sbjct: 1172 PPPLSPSLPPPPP-PPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSSPSSL 1220
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 7.5
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = -1
Query: 771 ARXXGXXQGXXGGXXEGXXXGRXXXXXXXGGXGGXXXXGXXAFXXGGGXXTXXWXXRVXG 592
AR G +G G G G GG GG G GGG
Sbjct: 158 ARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGA 217
Query: 591 PXRXKGGAXG 562
P R GG G
Sbjct: 218 PERVIGGGGG 227
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.7 bits (61), Expect = 7.5
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +2
Query: 629 PPPXXKALXPXXX*PPSPPXXXXXKXLPXXXPSXXPPXXPXXXP 760
PPP K L P P PP K P P PP P P
Sbjct: 560 PPPIPKLLSPPAPQAPMPP----LKASPVPPPEPSPPPAPKAAP 599
>06_02_0175 - 12624608-12625297
Length = 229
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -1
Query: 684 GGXGGXXXXGXXAFXXGGGXXTXXWXXRVXGPXRXKGGAXG 562
GG GG G GGG W G R KGG G
Sbjct: 106 GGGGGGGGGGGGGGGGGGGGGRRCWWGCGNGRRRHKGGKEG 146
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 9.9
Identities = 17/76 (22%), Positives = 23/76 (30%)
Frame = +2
Query: 521 ALTXNXXSXXGXXAPXAPPXSRXGPXTLXXXXXVXXPPPXXKALXPXXX*PPSPPXXXXX 700
A + N + P +PP + + PPP PP PP
Sbjct: 42 ASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQ 101
Query: 701 KXLPXXXPSXXPPXXP 748
LP + PP P
Sbjct: 102 SPLPPTTTTTTPPTAP 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,792
Number of Sequences: 37544
Number of extensions: 222121
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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