Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H18
         (1012 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 919  PPPPPPP 939
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 919  PPPPPPP 939
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 922  PPPPPPXP 945
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 925  PPPPPXPP 948
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +1

Query: 898 PPXLEXXPPPPPPPXPPXXXVPXXLXXPP 984
           PP     PPP  PP  P    P  +   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISP 67


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 919 PPPPPPPXPPXXXVP 963
           P P PPP PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 919 PPPPPPPXPP 948
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 962 GTXXXGGXGGGGGGG 918
           G+   G   GGGGGG
Sbjct: 37  GSIVVGANNGGGGGG 51


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 896  PPXXSSXPPPPXPXPHPRXXRS 961
            P   S  PPPP P  H +   S
Sbjct: 1852 PVSGSPEPPPPPPRNHDQNNSS 1873


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,645
Number of Sequences: 438
Number of extensions: 4878
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33621042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)