Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_H17
         (1004 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.45 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   5.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 893 PPPPPPPXXFXXXXXPXNPPXXFFFXXXKKK 801
           PPPPPPP  F     P  PP   +    K K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
 Frame = -3

Query: 891 PPPPPPPXFFXXXXXXX---PPPXXXXXXXXXXXXXKXXXXXGXPXPPPPP 748
           PPPPPP              PPP                   G P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 893 PPPPPPPXXFXXXXXPXNPP 834
           PPPPPPP        P  PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
 Frame = -1

Query: 893 PPPPPPPXXFXXXXXPXNPPXXFFFXXXKKKKK-------KKXXXXXGXPXPPPP 750
           PPPPPPP          N P  ++        +       K+       P PPPP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 891  PPPPPPP 871
            PPPPPPP
Sbjct: 1095 PPPPPPP 1101



 Score = 21.0 bits (42), Expect(2) = 5.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 768  PXPPPPPXXXXK 733
            P PPPPP    K
Sbjct: 1096 PPPPPPPAEVEK 1107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,967
Number of Sequences: 5004
Number of extensions: 29649
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)